Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2 113 6e-20 seq10 105 9e-18 >seq2 Length=821816 Score = 113 bits (124), Expect = 6e-20 Identities = 313/469 (67%), Gaps = 16/469 (3%) Strand=Plus/Plus Query 69268 AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATC 69327 ||||| | ||||| | ||||| || || ||||| | | | || || || | ||| Sbjct 732378 AGTGCAATTGATGCCAAGTTACATACAGCAACCTCCTCGGGAGATGTGTACTGAACAATC 732437 Query 69328 TCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTA 69387 || ||| || ||| |||| ||||| |||||||| ||||| || ||| || Sbjct 732438 TCGCAACACAGGTTAGAGGATTTAATAGTACCCAGATTCTGCTGGTTCGACTTGGCATTG 732497 Query 69388 CAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGAT 69447 || || ||||| || || |||||||| | ||||| || |||||| || | || | Sbjct 732498 CAAGCATCCTTATAGAGCATAAACGGGTTGCCAGTCTCTATCTGACTTTGCAATATGGCA 732557 Query 69448 TTCCAAACGACC----CTAGCATT-TATTACGGTCTTGTAACGCTTC-TCTTTTTCATAT 69501 ||| | | | || | || | ||||| | | || || | ||| | || | Sbjct 732558 AACCACAGGGTCTGTGCTGGGATAGTCTTACGACCAAG--ACCCTCCATCTCGT--ATTT 732613 Query 69502 TGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTT 69561 ||||||| ||| ||||| ||||| ||||||||||||| || ||| | || |||| Sbjct 732614 GGTGTATAGGGCC--TCGAACTCATCACCCCAAACATCATATAAGCCACGGCACTCATCG 732671 Query 69562 GGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATC 69621 |||||||||| || ||| || | | || ||| || |||||||| || || |||||| Sbjct 732672 GGACACATCAGTGTCCAGTCACCGTTGGACTCAACACGCTTCATAAACAGGTCAGGAATC 732731 Query 69622 CAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCC-TGTAttttttttAA 69679 || | ||| ||| || | ||| | || | | ||| ||| || || | || || Sbjct 732732 CACAAAGC-ATAGAACAAATCACGGGCGCGAGCTTCCTCAGCACCGTGGTTCTTGCGCAA 732790 Query 69680 GATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 69728 | || ||||| |||||||| |||| ||||||||| || || || || || Sbjct 732791 G-TCCAGAAAGTCCATAATGTCAGCATGCCATGGCTCAAGGTAGATGGC 732838 >seq10 Length=1797577 Score = 105 bits (116), Expect = 9e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 39632 TGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCA 39691 ||||| || || || || ||| | |||||| ||| || | || ||||| |||||| Sbjct 1461251 TGTAGTCCTTCGTCCCTTGCAATAAGTTCGTTGCTAAAGGTCAACCCTGGCATGAGACCA 1461310 Query 39692 CGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCT 39751 || ||||| ||||||||||| ||| |||| ||||||||| || |||||||| |||||| Sbjct 1461311 CGTTTTTTAAGCCAAAATATAGCACAAAAACTTCCAGAAAAAAATATGCCTTCAACTGCT 1461370 Query 39752 GCAAATGCAAC 39762 ||| ||||||| Sbjct 1461371 GCATATGCAAC 1461381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908679790960