Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 201 1e-46 seq9 86.0 8e-12 >seq2 Length=821816 Score = 201 bits (222), Expect = 1e-46 Identities = 895/1396 (64%), Gaps = 46/1396 (3%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 |||||| || | ||||| || || || | || || || |||| || |||| ||||| Sbjct 731849 GTAGATATTGCTGGTGTAGGGCTCGAACGACTCGTTGTTGCCCAGAATCTGTGATGTGGA 731908 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTG---ATGCG 110823 ||||||||||| || |||| || || ||| || | |||| | | ||| || || Sbjct 731909 TGCTGTTGGCATGGGCGCCAGGAATAGCGAGTTGCGTA-ACCCGTGT--TTGGCCATACG 731965 Query 110824 TTCCTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCACC--TT----CCCACATGTC 110877 | |||||| |||||||||| | | |||| | ||| | || |||| | ||| Sbjct 731966 CTGCTTGAGGCCATCCCAGTCCCAT---AACTTGTTGTCAACAGTTGCACCCCAAAGGTC 732022 Query 110878 AAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGC 110937 |||||||||| || |||||||| || || || | | || || | ||| | Sbjct 732023 AAACTGAAGCTTACCCTGGGACGCTGGTGACCCTGGGTAACTCTCGTAAGTACCATACTT 732082 Query 110938 TTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGC 110997 ||||||| | | | |||| | ||| || || || ||||| |||||| Sbjct 732083 CTCAGCCAGTGAAATTGATTCATCCAAACACCCGTAGTATATAGTCTCAAATATACGACG 732142 Query 110998 ATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGC 111057 |||| |||||| || || || || ||||||| || || ||| || || ||| || Sbjct 732143 GTTCAGCTCCTTAGCCTCCTCGGACTCAAATGGATAACGCATCAACATGAAGGTATCAGC 732202 Query 111058 GAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA---CTTTCGCGCAGT 111114 |||||| ||||| || | |||||| || ||||| || ||| || ||| | ||| Sbjct 732203 GAGACCCTGAACGCCGACACCAATGGGCCTGTGGCGGTGATTTGATACCTTGGCCTCAGG 732262 Query 111115 CTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 111174 |||||| || | || | |||||||| ||| || || | ||||| | | Sbjct 732263 ---AACGGGGTAGTAGTTACGATCAATGACCTTGTTCAGGTTGTAGGTAATCACACGAGC 732319 Query 111175 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAG 111234 | || | || || | | || | || |||| | | |||||| | ||||| Sbjct 732320 AACGTCGTACAGCTTCTTGAAGTCGTAGGTCTTGTTCTCCTTGTCCACATACATGGGAAG 732379 Query 111235 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 111294 || ||||||||||| || || ||||| ||| || | |||||||| | ||| || Sbjct 732380 TGCAATTGATGCCAAGTTACATACAGCAACCTCCTCGGGAGATGTGTACTGAACAATCTC 732439 Query 111295 TGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCA 111354 ||| | ||| || ||||| || |||| ||||| ||||| ||| ||||| Sbjct 732440 GCAACACAGGTTAGAGGATTTAATAGTACCCAGATTCTGCTGGTTCGACTTGGCATTGCA 732499 Query 111355 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTT 111414 |||||||| |||||||| | || | || ||||| |||| |||| |||| | Sbjct 732500 AGCATCCTTATAGAGCATAAACGGGTTGCCAGTCTCTATCTGAC-TTTGC-AATA---TG 732554 Query 111415 CCAAACATCGGCG-----GCTGGTACAATGGCGTTGGCCC--GTCCCTCCGCCTCGTACT 111467 ||||| | | | ||||| | | | | | | || | |||||| |||||| | Sbjct 732555 GCAAACCACAGGGTCTGTGCTGGGATAGT--CTTACGACCAAGACCCTCCATCTCGTATT 732612 Query 111468 TTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTG 111527 | ||||| ||||| || ||||| |||||| | || | | || | || || | Sbjct 732613 TGGTGTATAGGGCCTCGAACTCATCACCCCAAACATCATATAAGCCACGGCACTCATCGG 732672 Query 111528 GACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 111587 |||| | || | ||| | ||| |||||| |||||||| || ||||| ||||||| Sbjct 732673 GACACATCAGTGTCCAGTCACCGTTGGACTCAACACGCTTCATAAACAGGTCAGGAATCC 732732 Query 111588 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 111647 ||| | | || | ||| | ||||| || || |||| ||||| || || | Sbjct 732733 ACAAAGCATAGAACAAATCACGGGCGCGAGCTTCCTCAGCACCGTGGTTCTTGCGCAAGT 732792 Query 111648 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC 111707 | || || ||||| || || || |||||||||||||| |||| || | || || || | Sbjct 732793 CCAGAAAGTCCATAATGTCAGCATGCCATGGCTCAAGGTAGATGGCAAAGGAACCTTTAC 732852 Query 111708 G---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAA 111764 | | ||| | || | ||||| || || |||| ||| |||| || | |||||| | Sbjct 732853 GCTTGCCACCACCCTGGTCAACATAACGAGCAGTGGAGTTGAATATACGTAACATTGGGA 732912 Query 111765 TAATACCATCTGAT-TGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCA 111823 | ||| | || | | || || || || ||||| || | |||| || ||| Sbjct 732913 CTAGACCGT-TGCTCTTGCCGTTGGTACCACGAATGTAAGCGCCACTGGCCCT--GATCT 732969 Query 111824 TG-GATGTGC-ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAG 111881 || || || | |||||||| ||||| ||||| || ||||||| || | || Sbjct 732970 TGTGACAAGCAAGGCCAATACCACCAGCACACTTGCTAATGAAGGCACACTGGGTCAAAG 733029 Query 111882 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 111941 | | | ||||| | ||||| ||||| || | | | ||| ||||||||||||| Sbjct 733030 TCTCGAAAATACCAGCCAAGGAGTCATCCTTCATGTCCAGTAAGAAACAACTGGACATCT 733089 Query 111942 GCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGG 112000 | |||| || ||||| | ||| | ||| || || || ||| |||| ||| | || Sbjct 733090 GAGGTCGAGGAGTACCGGAGAAGAACAAGGTGGGAGTCGCATGAGTGAA-GTACTTCTGA 733148 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||| || ||| |||| | | | |||||||| | |||||| || | Sbjct 733149 CTCATCAAGTGGTAGGTCTGAATGGTACGCTCAATGTCACCAGTGTGGATACCAGCAGAT 733208 Query 112061 ACCCGCATGAACATGT 112076 || ||||| ||||||| Sbjct 733209 ACACGCATTAACATGT 733224 >seq9 Length=2593320 Score = 86.0 bits (94), Expect = 8e-12 Identities = 250/383 (65%), Gaps = 19/383 (5%) Strand=Plus/Minus Query 181607 TGGTACATAGCAACTGAAACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGG 181666 ||||| | || ||||| || ||||| || || || | |||||| || | ||||| || Sbjct 1028288 TGGTATCTGGCTGCTGAATCCTGTACCTATCCCTTCAGATCCATTGACCAATACCATGGG 1028229 Query 181667 TAAAGTTGGCATGTAAAAGTCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAG 181726 || ||||| ||||| | ||||| |||| | || || || | | ||| | || Sbjct 1028228 TATTGTTGGTATGTAGTACATCGGTTCTATGGTCTGCCCCTCTTCATTCTGGTACTCCAG 1028169 Query 181727 GATCGGGTCATCC-------CGAGGATCAAAGATCTTGCGAGCCTCCTTGG--TAAGTTT 181777 ||| ||||| ||| ||||| || | || |||| |||| || Sbjct 1028168 GATATTATCATCTTCTTCTACGAAAATCAAC---CTCGTGA------TTGGGTTAAGCTT 1028118 Query 181778 TGTGAAGATATACCTCGTTTGAGAAGCGTCTTTACCACCCATGAGACGCGTACCAAATTG 181837 |||||||| || | || | ||| || || ||||||||| ||| ||||||| || Sbjct 1028117 GGTGAAGATGTAACGCGCTGCAGATGCATCCTTACCACCCTCCTTACGGCTACCAAACTG 1028058 Query 181838 ACCACATGGCTCAAGAAGGTTAATGTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAAC 181897 ||| ||||| || | | ||| || ||||| || ||| | ||| | |||| || | Sbjct 1028057 ACCGCATGGTTCCAACACGTTGATATTGTTGGACCCTACAAAGTTCTGTGCCATATTGAT 1027998 Query 181898 GATGGTATCCGCAAGGGACACTTCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGC 181957 ||||| | || || |||| || |||||||| || || | ||||| ||||| | Sbjct 1027997 AATGGTTTGTTGCAGCGAAGCTTCTCCATGGTGGTATGCAGAGTGTTCCGCGACATAACC 1027938 Query 181958 CGCCAACTGTGCCACCTT-CATT 181979 | | |||||||||||| |||| Sbjct 1027937 TGTGAGCTGTGCCACCTTACATT 1027915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031890094400