Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 181 1e-40 >seq2 Length=821816 Score = 181 bits (200), Expect = 1e-40 Identities = 1046/1653 (63%), Gaps = 74/1653 (4%) Strand=Plus/Minus Query 104315 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGT 104374 |||| ||| || || || ||| | ||| | ||||| || |||| || ||||||||| Sbjct 733138 TTCACTCATGCGACTCCCACCTTGTTCTTCTCCGGTACTCCTCGACCTCAGATGTCCAGT 733079 Query 104375 TGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAG 104434 || ||| | | | || ||||| ||||| | ||||| | | ||| | || || Sbjct 733078 TGTTTCTTACTGGACATGAAGGATGACTCCTTGGCTGGTATTTTCGAGACTTTGACCCAG 733019 Query 104435 TGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGAT-GCACATC-CATGATGTGAGAG 104492 ||||| || ||||| ||||| |||||||| | || || || ||| || | Sbjct 733018 TGTGCCTTCATTAGCAAGTGTGCTGGTGGTATTGGCCTTGCTTGTCACAAGATC--AGGG 732961 Query 104493 CCAATAAATCTCGTATTCGGGGGACAAATGGTCA-ATCAGATGGTATTATTCCAATGCTT 104551 ||| | || ||||| || || || || | | || | ||| | | |||||| | Sbjct 732960 CCAGTGGCGCTTACATTCGTGGTACCAACGGCAAGAGCA-ACGGTCTAGTCCCAATGTTA 732902 Query 104552 CGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCT 104608 || |||| ||| |||| || || ||||| | || | ||| | || || || || Sbjct 732901 CGTATATTCAACTCCACTGCTCGTTATGTTGACCAGGGTGGTGGCAAGCGTAAAGGTTCC 732842 Query 104609 ATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTC 104668 | || |||| |||||||||||||| || || || ||||| || || || ||||| Sbjct 732841 TTTGCCATCTACCTTGAGCCATGGCATGCTGACATTATGGACTTTCTGGACTTGCGCAAG 732782 Query 104669 AACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGAT 104728 ||||| |||| ||||| || || ||| ||| | |||| ||| | |||||||| || Sbjct 732781 AACCACGGTGCTGAGGAAGCTCGCGCCCGTGATTTGTTCTATGCTTTGTGGATTCCTGAC 732722 Query 104729 CTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCA 104788 || || |||||| | |||||| | || | ||| | || | ||||| || || Sbjct 732721 CTGTTTATGAAGCGTGTTGAGTCCAACGGTGACTGGACACTGATGTGTCCCGATGAGTGC 732662 Query 104789 CCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAA 104848 | ||| | | |||| |||||| ||||| || ||||| ||||| || |||||| Sbjct 732661 CGTGGCTTATATGATGTTTGGGGTGATGAGTTCGAGGCCCTATACACCAAATACGAGATG 732602 Query 104849 GAAGGTC--GGGCGACTGCGACGGTGCCAGCTGCCGA-TGTGTGGAAAGC--TATTCTCA 104903 || |||| || || | ||| | ||||| | || ||||| || |||| | Sbjct 732601 GAGGGTCTTGGTCG--TAAGACTATCCCAGC-ACAGACCCTGTGGTTTGCCATATTGCAA 732545 Query 104904 AGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGA 104963 || ||| | |||||||| | || | ||||| || || || || || || ||| Sbjct 732544 AG--TCAGATAGAGACTGGCAACCCGTTTATGCTCTATAAGGATGCTTGCAATGCCAAGT 732487 Query 104964 GTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAAT 105023 || || ||||| ||||| || || || || || ||| || || | | | Sbjct 732486 CGAACCAGCAGAATCTGGGTACTATTAAATCCTCTAACCTGTGTTGCGAGATTGTTCAGT 732427 Query 105024 TTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATG 105083 ||| || ||| ||||| |||||| | |||||||| || || |||| ||||| Sbjct 732426 ACACATCTCCCGAGGAGGTTGCTGTATGTAACTTGGCATCAATTGCACTTCCCATGTATG 732367 Query 105084 TGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCA 105143 |||| |||| ||||| | || | | || || |||| ||| | | | Sbjct 732366 TGGACAAGGAGAACAAGACCTACGACTTCAAGAAGCTGTACGACGTTGCTCGTGTGATTA 732307 Query 105144 CCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTA 105200 || | ||||| |||| || |||||| | || | |||||||| |||| || Sbjct 732306 CCTACAACCTGAACAAGGTCATTGATCGTAACTACTACCCCGTTCCTGAG---GCCAAGG 732250 Query 105201 AATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCA 105260 ||| ||| | ||| | || |||||| |||| |||||||||||||| ||| |||| Sbjct 732249 TATCAAATCACCGCCACAGGCCCATTGGTGTCGGCGTTCAGGGTCTCGCTGATACCTTCA 732190 Query 105261 TTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTG 105320 | | || | ||||||| ||||| || || ||||| | || || ||||||| Sbjct 732189 TGTTGATGCGTTATCCATTTGAGTCCGAGGAGGCTAAGGAGCTGAACCGTCGTATATTTG 732130 Query 105321 AGACCATGTATCACGCCGCTCT---TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTC 105377 |||| || || ||| | | ||| | | |||| |||| ||| ||||| Sbjct 732129 AGACTATATACTACGGGTGTTTGGATGAATCAATTTCA---CTGGCTGAGAAGTATGGTA 732073 Query 105378 CATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGG 105437 | || || | | || || ||||| || || || |||||| ||||| | |||| Sbjct 732072 CTTACGAGAGTTACCCAGGGTCACCAGCGTCCCAGGGTAAGCTTCAGTTTGACCTTTGGG 732013 Query 105438 ----AA--GGTGAGACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCAT---CA 105488 || | ||| | |||| | | |||||||| | |||||| | || || || Sbjct 732012 GTGCAACTGTTGACAACAAGTT---ATGGGACTGGGATGGCCTCAAGCAGCGTATGGCCA 731956 Query 105489 AGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCAC 105548 | | | |||| | || ||| || || |||| || ||||||||||| ||||| ||| Sbjct 731955 A--ACACGGGT-TACGCAACTCGCTATTCCTGGCGCCCATGCCAACAGCATCCACATCAC 731899 Query 105549 AAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAA 105608 | || |||| || || || | || || |||||||| | || ||||| || | Sbjct 731898 AGATTCTGGGCAACAACGAGTCGTTCGAGCCCTACACCAGCAATATCTA-CT-------A 731847 Query 105609 CCCTCGCG--------GGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAA 105660 || |||| || || || | | |||||| ||| | || ||| || Sbjct 731846 CCGCCGCGTGCTGAGTGGTGAATTCTTTGTGGTCAACCCTCATTTACTGCGTGATCTGGT 731787 Query 105661 AGAGATTGGTCTCTGGTCCAAGGATATGAAGGA----TCTCATGGTGAAAGCGGGTGGTT 105716 ||| |||| || ||| | | ||||||||| | || | | | |||| | Sbjct 731786 AGACCTTGGCCTTTGGGATGACGCTATGAAGGAGAAGTTGATTGCTTACAACGGG----T 731731 Query 105717 CCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGG 105776 | ||| | |||| || ||| || | | || ||| | | ||| || ||||||| Sbjct 731730 CGCTTCGTCACATTGAGGGTATCCCTCAGCACATCAAGGACCTTTACAAGACCGTTTGGG 731671 Query 105777 AAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAA 105836 |||| ||| |||| | || |||||||| || || |||||| |||||||||| | Sbjct 731670 AAATTAAGCAGAAGAGCATTATCGACATGGCTGCGGACCGTGGTATTTTCATTGATC--A 731613 Query 105837 GTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCA 105894 |||| | | | ||| ||| | | || || || | |||||| | |||||| Sbjct 731612 GTCACAATCGCTCAATATCTACCTTGACCAGCCTACTTTCGGCAAGCTGACCAGTATGCA 731553 Query 105895 CATGTACAGTTGGAAGAAGGGTCTCAAAACGGG 105927 | | || | |||||||||||||| || || || Sbjct 731552 CTTCTATGGCTGGAAGAAGGGTCTGAAGACCGG 731520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260697929360