Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq9 327 3e-84 seq11 140 1e-27 seq10 116 1e-20 seq8 102 2e-16 >seq9 Length=2593320 Score = 327 bits (362), Expect = 3e-84 Identities = 981/1495 (66%), Gaps = 27/1495 (2%) Strand=Plus/Minus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 ||||||| || || || || |||||||| || |||||||| | ||| | | | | Sbjct 2153101 CCGCTATCGGTATTGACTTGGGTACTACCTACTCTTGTGTAGGTGTATACAAGGACAACA 2153042 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 ||| ||||| ||| | ||||| || ||||| |||||||| || || ||||| || || | Sbjct 2153041 ATGTCGAAATCATTCCTAATGACCAGGGTAATAGAACAACACCCTCCTACGTAGCCTTCA 2152982 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 |||| || || ||| | || |||||| | || || || |||| || ||| || | | Sbjct 2152981 CCGACACCGAACGTCTTATCGGTGATGCCGCCAAGAACCAAGAAGCACGTAACCCTGAGA 2152922 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAAT 349436 | || || || || ||||| | |||||||| || || || ||||| | ||| Sbjct 2152921 ACACCGTATTCGACGCTAAAAGGCTTATTGGAAGGAGATTCGACGACAAGACCGTACAGG 2152862 Query 349437 CTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGA--CGGTGATAAACCAATTAT 349494 ||| | ||||| | || || | || |||| | ||||| |||||||| || Sbjct 2152861 ATGACATGAAACACTGGCCATTCAAGGTCA--CCAACGGTGTCGGTGGTAAACCAACCAT 2152804 Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGG 349553 ||||| | | || || || || | || |||| |||||||||||||| |||| Sbjct 2152803 CGAGGTCACCTTCCAGGGACAA-AAGAAGAGCTTCCACCCAGAAGAAATTTCATCCATGG 2152745 Query 349554 TTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTG 349613 | | | ||||||||||||||||| || || | ||| | || |||| ||||| | Sbjct 2152744 TGCTCATCAAAATGAAGGAAATTGCCGAGCTGTACCTGGGTAAGACCGTAAAGGATGCCG 2152685 Query 349614 TTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCA 349673 | || || ||||| ||||| || || || ||||| | || || || || ||||| | Sbjct 2152684 TCATCACCGTACCCGCCTACTTCAACGACTCCCAGAGGCAGGCTACCAAGGACGCTGGTA 2152625 Query 349674 GCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCAT 349733 |||||| || | || ||| | | || || || |||||||| ||||| || ||||| | Sbjct 2152624 CCATTGCTGGTCTCAACGTTATGCGTATCATCAACGAACCCACCGCTGCCGCCATTGCCT 2152565 Query 349734 ATGGGCTTGATAAAATGAGTGACC--AAGaaaaaaaTATTCTTATTTTTGATTTAGGTGG 349791 | || | || || | || || | |||| || || | || || || ||| | ||||| Sbjct 2152564 ACGGTTTGGACAAGA--AGGGATCTGAAGAGAAGAACGTACTCATCTTCGATCTTGGTGG 2152507 Query 349792 TGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAAC 349851 ||||||||| ||||| ||| | || || ||||||| || || || ||||| || || || Sbjct 2152506 TGGTACTTTCGATGTGTCAATCCTTACCATTGAAGACGGTATCTTCGAAGTCAAGGCCAC 2152447 Query 349852 TGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGT 349911 |||||||| || || |||||||| ||||| || || || |||||| ||| | ||| Sbjct 2152446 CGCTGGTGACACCCACCTTGGTGGTGAAGACTTCGACAACTTGCTCGTTGAGCACTGTGT 2152387 Query 349912 TAAAGAATT--TAAGCGTCA--AGCTAAAATTGATATTGGAGATAATCCTA-GAGCAATG 349966 || || | || ||| | | ||| || |||| | | | | | || | Sbjct 2152386 GCGTGACTTCATGAGGATCAACAACGGAAA--GAACTTGGCAAGCAACAAACGTGCTCTT 2152329 Query 349967 CGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGT-TCCTTATCATCTACTACCCAAAC 350025 ||||| || || || ||||| |||||||||||| | ||| || || ||||||| | Sbjct 2152328 CGTCGTCTCAGGACCCACTGTGAGCGTGCTAAGCGTGTGCTTTCCAGCT-CTACCCAGGC 2152270 Query 350026 CTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGC 350085 | | |||||| | || || || || || | || | | | | || | ||||| Sbjct 2152269 CACCATTGAACTCGACTCCCTCTTCGAAGGTATTGACTACAACACTACCATCAGCCGTGC 2152210 Query 350086 TCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGT 350145 ||| || || ||| | ||| || || || | ||| || || |||||||| | Sbjct 2152209 TCGTTTCGAGGAAATGTGTGGTGAGAAGTTCAGGGGAACTTTGATCCCAGTGGAAAAGGC 2152150 Query 350146 ATTAAAAGATGCAAAAATGTC--CAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGT 350203 ||| | || || | || ||| | | || | ||||| ||| | || |||||| Sbjct 2152149 ATTGGA--ATCCAGTGGTCTCGACAAGAGGAAAATCCACGAAGTCGTTCTTGTCGGTGGT 2152092 Query 350204 TCTACACGTATTCCAAAAGTTCAACAGTTACTATC--TGAGTTTTTTAATGGCAAAGAAC 350261 || || |||| ||| ||| || | ||| | ||| ||||| || || || ||||| | Sbjct 2152091 TCCACCCGTA-TCCCCAAGATCCAGAGTCTC-ATCAAGGAGTTCTTCAACGGAAAAGAGC 2152034 Query 350262 CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTA 350321 | | ||||| || || |||||||| ||||| || ||||| ||||| ||||| | | Sbjct 2152033 CAAGCCGCTCAATCAACCCCGATGAAGCCGTTGCCTACGGTGCCGCTGTACAGGCTGCCA 2151974 Query 350322 TTTTATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCAC 350381 | || || || | || | || || | || | | || || ||||| |||||| Sbjct 2151973 TCTTGTCCGGTGACCAGTCTGGCAAGATCCAGGAATTGCTTCTTCTCGATGTCGCTCCAC 2151914 Query 350382 TTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTA 350441 | || || || | ||||| |||||| || ||||| || || || || || | | Sbjct 2151913 TCTCCCTCGGTCTCGAAACCGCTGGTGGTGTCATGACCGTGCTCATCAAGAGGAACACCA 2151854 Query 350442 CTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAA 350501 | | ||||| || ||| |||| | || | || | | || ||| || || Sbjct 2151853 CAATCCCTACCAAGAAGACCCAGATCTTCACCACCAACGAGAACAACCAGGAAGGTGTGT 2151794 Query 350502 CAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAAT 350561 || || || || ||||||||||||||| || || || || || || ||| | | Sbjct 2151793 TCATCCAGGTCTTCGAAGGTGAACGTGCTATGACCAAGGACAACAACTTGCTAGGAAAGT 2151734 Query 350562 TTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCG 350621 | ||| | | ||| ||||| || | || || ||||| || ||||| |||||| Sbjct 2151733 TCCACCTCACCGGTATTGCACCAGCTCCACGTGGTGTGCCTCAAATCGAAGTTACTTTCG 2151674 Query 350622 ATATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAAATCAAGTGGTAA 350676 |||| ||| | || ||||| | || || || || | || || || | ||| || Sbjct 2151673 ATATCGATGCCAACGGTATCCTTAACGTCACTGCCATGGACAAGTCTACTGGAAA 2151619 Score = 136 bits (150), Expect = 1e-26 Identities = 196/275 (71%), Gaps = 5/275 (2%) Strand=Plus/Minus Query 349614 TTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCA 349673 |||| ||||| || || || || || || ||||||||| |||| || |||||||| Sbjct 1696689 TTATCACTGTGCCTGCATACTTCAACGACGCCCAGCGTCAGTCAACCAAGGATGCTGGTG 1696630 Query 349674 GCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCAT 349733 |||||| || | | ||| || | || || || |||||||| ||||| || ||||||| Sbjct 1696629 CCATTGCCGGTCTTGAAGTTGTACGCATCATCAACGAACCCACCGCTGCCGCTATTGCAT 1696570 Query 349734 ATGGGCTTGATAAAATGAGTGACCAA-GaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792 |||| | || | | | |||| ||| ||||| ||| | | |||| | |||||| Sbjct 1696569 ATGGTATAGACA----GGGCTACCACCGAATCTAATATCCTTGTATATGATCTTGGTGGT 1696514 Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852 |||||||| ||||||||| | || | ||||| || | || ||||| | | ||| Sbjct 1696513 GGTACTTTCGATGTATCAGTCCTTATGCTTGACTCTGGTGTCTTCGAAGTCATCGGTACT 1696454 Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 || ||||| || || |||||||| ||||| ||||| Sbjct 1696453 GCCGGTGACACCCACCTTGGTGGTGAAGACTTTGA 1696419 >seq11 Length=827912 Score = 140 bits (154), Expect = 1e-27 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 |||||||| | || | |||||| | ||| |||||| ||| || || || || || ||| Sbjct 715772 ATACCACCCCTCAAACGTAGAACTAAATGGAGAGTACTCTCCTTCTGGATGTTGTAGTCA 715831 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || || || || |||||||| | || || ||||||||||| | ||| ||||| || || Sbjct 715832 GACAACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGG 715891 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 ||||| || || || ||||| || || || || ||||| || || | ||| || ||| Sbjct 715892 GGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATAGTGTCACTGGGCTCA 715951 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | ||||| || || || |||| ||||| || ||||||||||| Sbjct 715952 ACCTCCAATGTAATGGTTTTACCCGTTAAGGTTTTAACGAAAATCTGCAT 716001 Score = 109 bits (120), Expect = 2e-18 Identities = 170/242 (70%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || |||| ||| | ||||| ||| | | ||| | ||||||| | |||||||||||| Sbjct 777064 AAGATGAGGGAGACGGCTGAGGCACACCTTGGTAGGAAAGTAACTAAGGCTGTTATTACT 777005 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || || ||||| || || | ||| | || || || || ||||||| ||||| Sbjct 777004 GTGCCTGCATATTTCAACGACTCACAGAGGCAGGCTACCAAGGACGCTGGCAAAATTGCT 776945 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || || | ||| |||| || ||||| || || ||||| || || | || | || ||| Sbjct 776944 GGTTTGGACGTTTTAAGGATTATTAACGAGCCGACTGCCGCTGCTTTGGCTTTCGGTCTT 776885 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 || ||| | |||| | ||| | ||| | | | |||||||||||||||||||||| Sbjct 776884 GAGAAA---AATGAC---GGAAAGACTATCGCTGTATATGATTTAGGTGGTGGTACTTTT 776831 Query 349802 GA 349803 || Sbjct 776830 GA 776829 >seq10 Length=1797577 Score = 116 bits (128), Expect = 1e-20 Identities = 170/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| | || | | ||| || || |||||| ||| || || || || | Sbjct 1344102 TTTGCATACCACCCCTCAAACGCAAAACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGT 1344161 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| || || || |||||||| | || || ||||||||||| | ||| ||||| | Sbjct 1344162 AGTCAGACAACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGT 1344221 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || ||||| || || || || || || || || | || | || Sbjct 1344222 CTGGGGGAATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTC-GCTG 1344280 Query 140683 G--TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | | || || |||| || | ||||| || || || || || |||||||| ||||| Sbjct 1344281 GGCTCCACCTCCAAG-GTGATGGTCTTACCAGTAAGAGTCTTGACAAAAATTTGCAT 1344336 Score = 111 bits (122), Expect = 5e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 ||||| | || | || ||| || || |||||| ||| || || || || || ||||| Sbjct 1343882 CCACCCCTCAAACGTAAAACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGAC 1343941 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 || || || |||||||| | || || ||||||||||| | ||| ||||| || || ||| Sbjct 1343942 AACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 1344001 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG--TTCAA 140688 || || || || ||||| || || || || || || || || | || | ||| | || Sbjct 1344002 ATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTC-GCTGGGCTCCAC 1344060 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || |||| || | ||||| || || || || || |||||||| ||||| Sbjct 1344061 CTCCAAG-GTGATGGTCTTACCAGTAAGAGTCTTGACAAAAATTTGCAT 1344108 Score = 93.3 bits (102), Expect = 1e-13 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| | || | | ||| || || ||||| ||| || || || || | Sbjct 1344330 TTTGCATACCACCCCTCAAACGCAAAACTAGGTGGAGAGTGCTCTCCTTCTGGATGTTGT 1344389 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| || || || |||||||| | || || ||||||||||| | ||| ||||| | Sbjct 1344390 AGTCAGACAACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGT 1344449 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAAT 140671 | || ||||| || || || ||||| || || || || || || || || Sbjct 1344450 CTGGGGGAATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCGAT 1344498 >seq8 Length=1729419 Score = 102 bits (112), Expect = 2e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 266271 TATACTCATTGTGAAATTCATCCAAGTACATTATTAGGTATTTTAGCATCTTGTATTCCA 266330 || || ||||||||||| |||||| || |||||||| | | || || ||||| Sbjct 496630 TACACACATTGTGAAATCCATCCATCTATGATATTAGGTGTATGTGCGTCAATAATTCCG 496571 Query 266331 TTTCCAGAACATAATCAAGCACCTCGTCTAACATATCAATGTGCAATGGGTAAACAGGCT 266390 ||||| || || || || |||| | ||||| ||| |||| ||||||||||||||| Sbjct 496570 TTTCCTGACCAGAACCAGTCACCCAGGAACACATACCAAAGTGCTATGGGTAAACAGGCT 496511 Query 266391 ATGGGTATCTATGTTACAAATTTTAATAATAGAATGGAT 266429 |||||| |||||| |||||||| ||| || |||||| Sbjct 496510 ATGGGTGTCTATGCCACAAATTTCAATCTCAGGATGGAT 496472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254128201242