Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2 242 4e-59 >seq2 Length=821816 Score = 242 bits (268), Expect = 4e-59 Identities = 1074/1676 (64%), Gaps = 56/1676 (3%) Strand=Plus/Minus Query 19167 AGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACG 19226 |||| ||| || ||||||| ||||||| |||||| || ||||| || ||| | ||| | Sbjct 733167 AGACCTACCACTTGATGAGTCAGAAGTACTTCACTCATGCGACTCCCACCTTGTTCTTCT 733108 Query 19227 CCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCA 19286 ||||||| || |||||||| || |||||| || ||| |||||||||||| | Sbjct 733107 CCGGTACTCCTCGACCTCAGATGTCCAGTTGTTTCTTACTGGACATGAAGGATGACTCCT 733048 Query 19287 TTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTA 19346 | | || || | |||||| | | |||| || ||| |||||| | || |||| Sbjct 733047 TGGCTGGTATTTTCGAGACTTTGACCCAGTGTGCCTTCATTAGCAAGTGTGCTGGTGGTA 732988 Query 19347 TCGGGATCCACTGCTCG----AATATCCGGTCGAGTGGTACACGAATCAATGGGACGAAC 19402 | || | |||| | || ||| || | ||||| | || ||| || ||| Sbjct 732987 TTGGCCT----TGCTTGTCACAAGATCAGGGCCAGTGGCGCTTACATTCGTGGTACCAAC 732932 Query 19403 GG-AGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGT 19461 || | ||| ||||| | ||||||||| | || | |||||| ||| || | || || Sbjct 732931 GGCAAGAGCA-ACGGTCTAGTCCCAATGTTACGTATATTCAACTCCACTGCTCGTTATGT 732873 Query 19462 CAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGC 19521 ||||||| || ||||| || || || || || ||||||||||| ||||||||||| || Sbjct 732872 TGACCAGGGTGGTGGCAAGCGTAAAGGTTCCTTTGCCATCTACCTTGAGCCATGGCATGC 732813 Query 19522 GGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCG 19581 ||| | ||||| || || || ||||| |||||| |||| ||||| ||| || Sbjct 732812 TGACATTATGGACTTTCTGGACTTGCGCAAGAACCACGGTGCTGAGGAAGCTCGCGCCCG 732753 Query 19582 CGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGA 19641 || | ||| || ||||||||||| ||||| || ||| || |||||| ||| Sbjct 732752 TGATTTGTTCTATGCTTTGTGGATTCCTGACCTGTTTATGAAGCGTGTTGAGTCCAACGG 732693 Query 19642 AGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGC 19701 || ||| |||||||| || | || |||| |||| || || || | || || | Sbjct 732692 TGACTGGACACTGATGTGTCCCGATGAGTGCCGTGGCTTATATGATGTTTGGGGTGATGA 732633 Query 19702 GTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGG-CCGGTTCAAGAAGGTGGTCCGGG 19760 |||| | | | ||| | |||| |||| | | || ||| ||| | Sbjct 732632 GTTCGAGGCCCTATACACCAAATACGAGATGGAGGGTCTTGGTC-GTAAGACTATCCCAG 732574 Query 19761 CCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGT 19820 | | | | | ||| | | | |||| ||| | ||||| |||| |||| ||| Sbjct 732573 CACAGACCCTGTGGTTTGCCATATTGCAAAGTCAGATAGAGACTGGCAACCCGTTTATGC 732514 Query 19821 GCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGT 19880 ||| ||||| || || |||||||| || ||| |||| | || | || || || | Sbjct 732513 TCTATAAGGATGCTTGCAATGCCAAGTCGAACCAGCAGAATCTGGGTACTATTAAATCCT 732454 Query 19881 CCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATC 19940 | ||||||||| || || | || | || || ||| ||| || ||||| Sbjct 732453 CTAACCTGTGTTGCGAGATTGTTCAGTACACATCTCCCGAGGAGGTTGCTGTATGTAACT 732394 Query 19941 TGGCGTCCCTGTGC-CTGCC---GACTTTCGTCAAGG---CCTCCTCCTTCGACTTTGCC 19993 |||| || | ||| || || | | | | ||||| | ||| |||||| Sbjct 732393 TGGCATCAAT-TGCACTTCCCATGTATGTGGACAAGGAGAACAAGACCTACGACTTCAAG 732335 Query 19994 AAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAAC 20053 || ||||||| || | || || | || || ||||| ||||| ||||| ||| Sbjct 732334 AAGCTGTACGACGTTGCTCGTGTGATTACCTACAACCTGAACAAGGTCATTGATCGTAAC 732275 Query 20054 TTTTACCCGACCGAGGCGGCGCGCAAG---TCGAATATGCGCCACCGGCCGATCGCGATC 20110 | |||| ||| | | | |||| || ||| |||||| |||| || | || Sbjct 732274 TACTACC---CCGTTCCTGAGGCCAAGGTATCAAATCACCGCCACAGGCCCATTGGTGTC 732218 Query 20111 GGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCT-CGGCCTCTCATTCGACGATCCCA- 20168 ||||| ||||| || || || |||||| || | || || |||| || ||| | Sbjct 732217 GGCGTTCAGGGTCTCGCTGATACCTTCATGTTGATGCGTTATC-CATTTGA--GTCCGAG 732161 Query 20169 -AGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAA 20227 |||| ||||| ||| | || || ||| | | ||| ||| | | ||| Sbjct 732160 GAGGCTAAGGAGCTGAACCGTCGTATATTTGAGACTATATACTACGGGTGTTTGGATGAA 732101 Query 20228 TCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCC 20287 || ||| || | || | || | ||||||| | | ||||| || |||||| Sbjct 732100 TCAATTTCACTGGCTGAGAAGTATGGTACTTACGAGAGTTACCCAGGGTCACCAGCGTCC 732041 Query 20288 GAGGGTATCCTCCAGCCGGACATGTGGGGCGTCAC---TGAGAATGAGTTTTGGAGC--- 20341 |||||| || ||| ||| | ||||| | || ||| || |||| ||| | Sbjct 732040 CAGGGTAAGCTTCAGTTTGACCTTTGGGGTGCAACTGTTGACAACAAGTTATGGGACTGG 731981 Query 20342 ---GCCCTCAAGGTTGAGATCAAGACC---CACGGGCTTCGCAACTCGTTGCTCGTCGCG 20395 | ||||||| || | | || |||||| | ||||||||| | || | ||| Sbjct 731980 GATGGCCTCAAG---CAGCGTATGGCCAAACACGGGTTACGCAACTCGCTATTCCTGGCG 731924 Query 20396 CCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTAC 20455 |||||||| || || || || | ||||| |||| ||||||||| | |||||||| ||| Sbjct 731923 CCCATGCCAACAGCATCCACATCACAGATTCTGGGCAACAACGAGTCGTTCGAGCCCTAC 731864 Query 20456 ACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCAC 20515 || | ||| ||||||| || || ||| ||||| ||| | |||| ||| || Sbjct 731863 ACCAGCAATATCTACTACCGCCGCGTGCTGAGTGGTGAATTCTTTGTGGTCAACCCTCAT 731804 Query 20516 CTGGTCCGCGA-CTTGCAGAAGATCG-ATATGTGGTCGCCCAAAATTAAGAATGAAATTG 20573 | | || || || | ||| | | | || | | | | || ||| | ||| ||| Sbjct 731803 TTACTGCGTGATCTGGTAGACCTTGGCCTTTGGGATGACGC--TATGAAGGA-GAAGTTG 731747 Query 20574 --TCCGAGCCGGCGGGAGCGTCCAGGCATT--GGATATCCCCCAGAACCTCAAGGACATT 20629 | | | || || || |||| || |||||| ||| || |||||||| || Sbjct 731746 ATTGCTTACAACGGGTCGCTTCGTCACATTGAGGGTATCCCTCAGCACATCAAGGACCTT 731687 Query 20630 TACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGC 20689 |||| |||||| |||||||| ||||||||||| ||||||||||| || || || || Sbjct 731686 TACAAGACCGTTTGGGAAATTAAGCAGAAGAGCATTATCGACATGGCTGCGGACCGTGGT 731627 Query 20690 GCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCTGGCGAAG 20749 | ||| || ||||| || ||||||||| ||| | | || | || | | | ||| Sbjct 731626 ATTTTCATTGATCAGTCACAATCGCTCAATATCTACCTTGACCAGCCTACTTTCGGCAAG 731567 Query 20750 CTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTA 20805 |||| | ||||| | || |||||| | ||||| || ||||| || | ||||| Sbjct 731566 CTGACCAGTATGCACTTCTATGGCTGGAAGAAGGGTCTGAAGACCGGTACCTACTA 731511 Score = 165 bits (182), Expect = 9e-36 Identities = 1068/1695 (63%), Gaps = 72/1695 (4%) Strand=Plus/Plus Query 78188 GTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATAC 78247 |||| || || ||||| | || ||||| |||||||||||||| || || | |||||||| Sbjct 731500 GTGTGCGTAAGTAGTAGGTACCGGTCTTCAGACCCTTCTTCCAGCCATAGAAGTGCATAC 731559 Query 78248 TCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGA 78307 | | ||||||| | | | | || | || | | |||| |||||||| || ||||| || | Sbjct 731560 TGGTCAGCTTGCCGAAAGTAGGCTGGTCAAGGTAGATATTGAGCGATTGTGACTGATCAA 731619 Query 78308 TGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGG 78367 || | ||| ||||| || ||||||||||| | ||| ||| ||| ||||| | || Sbjct 731620 TGAAAATACCACGGTCCGCAGCCATGTCGATAATGCTCTTCTGCTTAATTTCCCAAACGG 731679 Query 78368 TCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTACGCTCCCACCGGCTC 78427 || ||||| | |||| | | | |||| || || ||| | ||| | | Sbjct 731680 TCTTGTAAAGGTCCTTGATGTGCTGAGGGATACCCTCAATGTG-ACGAAGCGACCCGTTG 731738 Query 78428 ---GCA--CAATTTCATTCTTAATTTGAGGGT--TCC---AGCGATTGATCTTCTGAAGA 78477 ||| ||| ||| | ||| || || || ||| || | ||| | ||| Sbjct 731739 TAAGCAATCAACTTC-TCCTTCAT---AGCGTCATCCCAAAGGCCAAGGTCTACC--AGA 731792 Query 78478 TCCCGGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAG 78537 || || | | || |||| | || | ||| || || ||| ||||| |||| Sbjct 731793 TCACGCAGTAAATGAGGGTTGACCACAAAGAATTCACCACTCAGCACGCGGCGGTAGTAG 731852 Query 78538 ATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCG 78597 || ||| | ||||| |||||||| | ||||||||| |||| ||||| | || || || Sbjct 731853 ATATTGCTGGTGTAGGGCTCGAACGACTCGTTGTTGCCCAGAATCTGTGATGTGGATGCT 731912 Query 78598 GTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC---- 78653 || |||||||| || | | ||| || || || | ||| ||| || | || Sbjct 731913 GTTGGCATGGGCGCCAGGAATAGCGAGTTGCGTA-ACC---CGTGTTTGGCCATACGCTG 731968 Query 78654 CTTTAGGCC------GTCCCAAAATTCATTCGCCGCGATC---CCCCACATGTCCGGTTG 78704 ||| ||||| |||||| || | || | | | ||||| | ||| || Sbjct 731969 CTTGAGGCCATCCCAGTCCCATAACTTGTTGTCAACAGTTGCACCCCAAAGGTCAAACTG 732028 Query 78705 AAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGC 78764 ||| |||||| |||||| || ||||| | | ||||||||| || | || || || Sbjct 732029 AAGCTTACCCTGGGACGCTGGTGACCCTGGGTAACTCTCGTAAGTACCATACTTCTCAGC 732088 Query 78765 GAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAG 78824 ||| ||| || || | ||| ||| | || ||| || || | ||| || Sbjct 732089 CAGTGAAATTGATTCATCCAAACACCCGTAGTATATAGTCTCAAATATACGACGGTTCAG 732148 Query 78825 CTCGCGCGCCTTGGTCTCGTCGAACGAAA--GGCCGA-GCATCA---TGAAGACATCGGC 78878 ||| ||| | ||| ||| || || || | |||||| ||||| ||| || Sbjct 732149 CTC------CTTAGCCTCCTCGGACTCAAATGGATAACGCATCAACATGAAGGTATCAGC 732202 Query 78879 CAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATG--TTGCT-CTTTCGGGCCGC 78935 || ||||| ||||||| | | || || | |||||| || ||| | | || |||| | Sbjct 732203 GAGACCCTGAACGCCGACACCAATGGGCCTGTGGCGG-TGATTTGATACCTT--GGCCTC 732259 Query 78936 CTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGT 78995 ||||| |||| ||||| ||||| ||||||||| || | || |||| Sbjct 732260 AGGAACGGGGTAGTAGTTACGATCAATGACCTTGTTCAGGTTGTAGGTAATCACACGAGC 732319 Query 78996 CACCTCGTACAATTTGGCGAAATCAAAA----TGATTTCCTTTG--ATGAAAGTCGGTAG 79049 || ||||||| || ||| || | || | ||||| | | | || || Sbjct 732320 AACGTCGTACAGCTTCTTGAAGTCGTAGGTCTTGTTCTCCTTGTCCACATACATGGGAAG 732379 Query 79050 -GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTT 79108 ||| | ||||||| ||| || || || ||| || || | || | || | Sbjct 732380 TGCA-ATTGATGCCAAGTTACATACAGCAACCTCCTCGGGAGATGTGTACTGAACAATCT 732438 Query 79109 CTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTAC 79168 | |||| ||||| || || || || || | |||| |||||| ||| | || | Sbjct 732439 CGCAACACAGGTTAGAGGATTTAATAGTACCCAGATTCTGCTGGTTCGACTTGGCATTGC 732498 Query 79169 AGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGT 79228 | || ||||| ||| ||| |||| | || ||||| | |||||| | | | | | Sbjct 732499 AAGCATCCTTATAGAGCATAAACGGGTTGCCAGTCTCTATCTGACTTTGCAATATGGCAA 732558 Query 79229 CCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACC--GACCCTGTGCGACGTACGTCCG 79286 ||| | | | | || ||| | ||| ||| |||||| |||| | Sbjct 732559 ACCACAGGGTCTGTGCTGGGATAGTCTTACG--ACCAAGACCCTCCATCTCGTATTTGGT 732616 Query 79287 GTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCA 79346 ||| | | | ||| | || || | ||||| | ||| ||||||| | || || Sbjct 732617 GTATAGGGCCTCGAACTCATCACCCCAAACATCATATAAGCCACGGCACTCATCGGGACA 732676 Query 79347 CATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAG 79406 |||||| |||||| ||| |||||| || ||| || ||||| || ||||||| Sbjct 732677 CATCAGTGTCCAGTCACCGTTGGACTCAACACGCTTCATAAACAGGTCAGGAATCCACAA 732736 Query 79407 GGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAG 79466 || ||| | || ||| || ||||| | || |||||| |||| || || Sbjct 732737 AGCATAGAACAAATCACGGGCGCGAGCTTCCTCAGCACCGTGGTTCTTGCGCAAGTCCAG 732796 Query 79467 AAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTT 79526 ||||||||| ||||| || ||||| ||||| || |||||||| || ||||| || ||||| Sbjct 732797 AAAGTCCATAATGTCAGCATGCCATGGCTCAAGGTAGATGGCAAAGGAACCTTTACGCTT 732856 Query 79527 GCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGAT 79586 ||| || ||||||| || || || || ||| |||||| | || | ||| || || | Sbjct 732857 GCCACCACCCTGGTCAACATAACGAGCAGTGGAGTTGAATATACGTAACATTGGGACTAG 732916 Query 79587 GCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTT----CG 79642 |||| | |||||| || || || | || || |||| || || | Sbjct 732917 ACCGTTGCTCTTGCCGTTGGTACCACGAATGTAAGCGCCACTGGCCCTGATCTTGTGACA 732976 Query 79643 AGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCT 79702 |||| | || || || || | |||||| ||| || |||| | | |||| Sbjct 732977 AGCA----AGGCCAATACCACCAGCACACTTGCTAATGAAGGCACACTGGGTCAAAGTCT 733032 Query 79703 CGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTG 79762 || | || || | | ||||| |||||||| | | | ||| || || |||||||| | Sbjct 733033 CGAAAATACCAGCCAAGGAGTCATCCTTCATGTCCAGTAAGAAACAACTGGACATCTGAG 733092 Query 79763 GGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCA 79822 | ||||||| | ||| | ||| || ||||| || |||||| |||| || |||| Sbjct 733093 GTCGAGGAGTACCGGAGAAGAACAAGGTGGGAGTCGCATGAGTGAAGTACTTCTGACTCA 733152 Query 79823 TCAGATCGTACGTCT 79837 ||| | ||| |||| Sbjct 733153 TCAAGTGGTAGGTCT 733167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524704008160