Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 187 3e-42 seq9 82.4 8e-11 >seq2 Length=821816 Score = 187 bits (206), Expect = 3e-42 Identities = 367/542 (68%), Gaps = 8/542 (1%) Strand=Plus/Minus Query 53244 AGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACG 53303 |||| ||| |||| ||||| || |||||||| || || || || || ||| ||||| | Sbjct 733167 AGACCTACCACTTGATGAGTCAGAAGTACTTCACTCATGCGACTCCCACCTTGTTCTTCT 733108 Query 53304 CTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGA 53363 | ||||| || ||||||||||| || || ||| | ||| |||||||||||||| Sbjct 733107 CCGGTACTCCTCGACCTCAGATGTCCAGTTGTTTCTTACTGGACATGAAGGATGACTCCT 733048 Query 53364 TCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTA 53423 | | || || | |||||| | | |||||||| ||| |||||| | ||||||| Sbjct 733047 TGGCTGGTATTTTCGAGACTTTGACCCAGTGTGCCTTCATTAGCAAGTGTGCTGGTGGTA 732988 Query 53424 TCGGTATCCACTGCTCG----AACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAAC 53479 | || | |||| | || || | || | ||| | || || || ||| Sbjct 732987 TTGGCCT----TGCTTGTCACAAGATCAGGGCCAGTGGCGCTTACATTCGTGGTACCAAC 732932 Query 53480 GGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTC 53539 ||| | | || | || || ||| | || | |||||| ||| || || || || Sbjct 732931 GGCAAGAGCAACGGTCTAGTCCCAATGTTACGTATATTCAACTCCACTGCTCGTTATGTT 732872 Query 53540 AACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 53599 ||||||||||||| ||||| || || || || ||||||||||| ||||| ||||| || Sbjct 732871 GACCAGGGTGGTGGCAAGCGTAAAGGTTCCTTTGCCATCTACCTTGAGCCATGGCATGCT 732812 Query 53600 GACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGT 53659 ||||||||||| ||||| || |||| ||| || |||| || || ||| |||| Sbjct 732811 GACATTATGGACTTTCTGGACTTGCGCAAGAACCACGGTGCTGAGGAAGCTCGCGCCCGT 732752 Query 53660 GACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAG 53719 || |||| ||| |||||||||| ||||| || ||| | || ||| ||| Sbjct 732751 GATTTGTTCTATGCTTTGTGGATTCCTGACCTGTTTATGAAGCGTGTTGAGTCCAACGGT 732692 Query 53720 GAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAG 53779 || ||| |||||||| || | ||||||| ||| | | | ||| | ||||| ||| Sbjct 732691 GACTGGACACTGATGTGTCCCGATGAGTGCCGTGGCTTATATGATGTTTGGGGTGATGAG 732632 Query 53780 TT 53781 || Sbjct 732631 TT 732630 Score = 116 bits (128), Expect = 4e-21 Identities = 291/437 (67%), Gaps = 5/437 (1%) Strand=Plus/Minus Query 55482 TACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCA 55541 |||||||||| || || ||||||| |||||||| || || || | ||||| |||||| Sbjct 731946 TACGCAACTCGCTATTCCTGGCGCCCATGCCAACAGCATCCACATCACAGATTCTGGGCA 731887 Query 55542 ACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTG 55601 |||||||| |||||||||| ||||| | ||| |||||| ||||| || |||| Sbjct 731886 ACAACGAGTCGTTCGAGCCCTACACCAGCAATATCTACTACCGCCGCGTGCTGAGTGGTG 731827 Query 55602 AGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGC-AGAAGATCAACAAGTGGAAC 55660 | || | || ||||| || | | || ||| ||| | | ||| Sbjct 731826 AATTCTTTGTGGTCAACCCTCATTTACTGCGTGATCTGGTAGACCTTGGCCTTTGGGATG 731767 Query 55661 CCGCA--GATCAAGACGGATATTGTGCGGAACGGGGGG-TCCGTCCAGAATCTGGAGATT 55717 ||| || ||| | |||| |||||| | | |||| | | | || || Sbjct 731766 ACGCTATGAAGGAGAAGTTGATTGCTTACAACGGGTCGCTTCGTC-ACATTGAGGGTATC 731708 Query 55718 CCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATT 55777 |||| || ||||||| ||||| ||| || ||||| ||| |||||||| | || Sbjct 731707 CCTCAGCACATCAAGGACCTTTACAAGACCGTTTGGGAAATTAAGCAGAAGAGCATTATC 731648 Query 55778 GACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATG 55837 |||||| ||| || |||||| | ||| || ||||| || || || || |||| | | Sbjct 731647 GACATGGCTGCGGACCGTGGTATTTTCATTGATCAGTCACAATCGCTCAATATCTACCTT 731588 Query 55838 GAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTC 55897 || | ||| | | | |||| ||| | |||||||| || || ||||||||||| || Sbjct 731587 GACCAGCCTACTTTCGGCAAGCTGACCAGTATGCACTTCTATGGCTGGAAGAAGGGTCTG 731528 Query 55898 AAGACGGGTATGTACTA 55914 ||||| |||| ||||| Sbjct 731527 AAGACCGGTACCTACTA 731511 >seq9 Length=2593320 Score = 82.4 bits (90), Expect = 8e-11 Identities = 186/275 (68%), Gaps = 6/275 (2%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTG--GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT 152086 ||||||||||| | | |||| | |||||||| ||||| || || | ||||||| Sbjct 1028116 GTGAAGATGTAAC--GCGCTGCAGATGCATCCTTACCACCCTCCTTACGGCTACCAAACT 1028059 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 | || | || || | | ||||| ||||||| || || || ||||| |||| ||| | Sbjct 1028058 GACCGCATGGTTCCAACACGTTGATATTGTTGGACCCTACAAAGTTCTGTGCCATATTGA 1027999 Query 152147 CAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 ||| || ||||| ||||| || ||||| || || | || ||||||| || | Sbjct 1027998 TAATGGTTTGTTGCAGCGAAGCTTCTCCATGGTGGTATGCAGAGTGTTCCGCGACATAAC 1027939 Query 152207 CCGCCAACTGCGCCACCTT-CATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 | | | ||| |||||||| ||| || | ||||| ||| || || || | | | Sbjct 1027938 CTGTGAGCTGTGCCACCTTACAT-TCACCCACTAGGTTACGCTTCAGGCAACCGAAGAGC 1027880 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCAC 152300 ||||| | ||| ||| ||| |||| ||||| || Sbjct 1027879 ACCTTCCTCTGTCCTGGCTTCCAACCATCCACTAC 1027845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215904237200