Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2 266 4e-66 seq10 161 1e-34 seq11 140 4e-28 seq9 96.9 4e-15 >seq2 Length=821816 Score = 266 bits (294), Expect = 4e-66 Identities = 699/1054 (66%), Gaps = 31/1054 (3%) Strand=Plus/Plus Query 80709 CATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTT 80768 ||||| |||||| ||||| || ||||||||||||| | || || | |||||| | Sbjct 732182 CATCAACATGAAGGTATCAGCGAGACCCTGAACGCCGACACCAATGGGCCTGTGGCGGTG 732241 Query 80769 GTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTT 80828 || ||| || |||||| |||| ||||| ||||| ||| ||||| ||||||||| Sbjct 732242 ATTTGATACCTTGGCCTCAGGAACGGGGTAGTAGTTACGATCAATGACCTTGTTCAGGTT 732301 Query 80829 GCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT---TGGTTCCCCTT 80885 | |||| || || | ||| || | || |||| |||||| | | |||| |||| Sbjct 732302 GTAGGTAATCACACGAGCAACGTCGTACAGCTTCTTGAAGTCGTAGGTCTTGTTCTCCTT 732361 Query 80886 ---CACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATC 80942 |||| | ||||| | || |||| || || || || ||||| || | | Sbjct 732362 GTCCACATACATGGGAAGTGCAATTGATGCCAAGTTACATACAGCAACCTCCTCGGGAGA 732421 Query 80943 TGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002 ||| ||| || || || |||| ||||| || ||||| |||||||| || | ||| Sbjct 732422 TGTGTACTGAACAATCTCGCAACACAGGTTAGAGGATTTAATAGTACCCAGATTCTGCTG 732481 Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062 ||| |||||||| |||||||| ||||| ||| ||| ||||| | || ||||| | ||| Sbjct 732482 GTTCGACTTGGCATTGCAAGCATCCTTATAGAGCATAAACGGGTTGCCAGTCTCTATCTG 732541 Query 81063 TGACTTG--AGGATGGCGTCCCAAA---TCTCGCGCGCCTTGACCACCTTGCGGAATTTG 81117 |||| | ||||| ||| | ||| | || || ||| || Sbjct 732542 --ACTTTGCAATATGGCAAACCACAGGGTCT---GTGCTGGGATAGTCTTACGACCAAGA 732596 Query 81118 CCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGG 81177 || || | | || |||| ||| | ||||||| |||| || ||| | | Sbjct 732597 CCCTCCATCTCGTATTTGGTGTATAGGGCCTCGAACTCATCACCCCAAACATCATATAAG 732656 Query 81178 TCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATG 81237 | ||||||| | || |||||||| |||||| || | ||| ||| |||||| Sbjct 732657 CCACGGCACTCATCGGGACACATCAGTGTCCAGTCACCGTTGGACTCAACACGCTTCATA 732716 Query 81238 AAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCC 81297 || |||||| ||||| | || ||||| || ||| ||| || |||||| |||| Sbjct 732717 AACAGGTCAGGAATCCACAAAGCATAGAACAAATCACGGGCGCGAGCTTCCTCAGCACCG 732776 Query 81298 TGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACG 81357 ||||| |||||| || ||||||||||| ||||| |||||||||||||| || || | | Sbjct 732777 TGGTTCTTGCGCAAGTCCAGAAAGTCCATAATGTCAGCATGCCATGGCTCAAGGTAGATG 732836 Query 81358 GCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAAT 81414 || | || || || || | |||||||||| || ||||| ||||| | ||| ||| Sbjct 732837 GCAAAGGAACCTTTACGCTTGCCACCACCCTGGTCAACATAACGAGCAGTGGAGTTGAAT 732896 Query 81415 ACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGA---TACGCGAC 81471 | ||| ||||| |||| | ||| | || ||||| ||| |||||| || ||| Sbjct 732897 ATACGTAACATTGGGACTAGACCGTTGCTCTTGCCGTTGGTA-CCACGAATGTAAGCG-- 732953 Query 81472 CCCTTGGCGCGCACCTTGCTGA-TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTG 81530 || |||| | | |||| ||| | ||| || || ||||| | ||||| ||| Sbjct 732954 CCACTGGCCCTGATCTTG-TGACAAGCAAGGCCAATACCACCAGCACACTTGCTAATGAA 733012 Query 81531 AGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAA 81590 |||||| || ||| ||||| |||| || | | | || | |||||||| || || Sbjct 733013 GGCACACTGGGTCAAAGTCTCGAAAATACCAGCCAAGGAGTCATCCTTCATGTCCAGTAA 733072 Query 81591 GAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTG 81650 |||||| || ||||||||||| | | |||| ||||| || || ||||| || Sbjct 733073 GAAACAACTGGACATCTGAGGTCGAGGAGTACCGGAGAAGAACAAGGTGGGAGTCGCATG 733132 Query 81651 AATGAAATAACGGTTTGA--CATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCA 81708 | |||| || | ||| ||||| || ||||| | || || ||| || || Sbjct 733133 AGTGAAGTA--CTTCTGACTCATCAAGTGGTAGGTCTGAATGGTACGCTCAATGTCACCA 733190 Query 81709 CCGTGAATACCGATAGCTACACGCATAAACATGT 81742 ||| ||||| || ||||||||| ||||||| Sbjct 733191 GTGTGGATACCAGCAGATACACGCATTAACATGT 733224 >seq10 Length=1797577 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||||||||| ||||| || ||||| || || | ||||| ||| | | Sbjct 1344336 ATGCAAATTTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAGGTGGAGCCCAGC 1344277 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || || |||||||||||||| ||||| ||||||||| Sbjct 1344276 GACACTATCGAAAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 1344217 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || |||||||||||||| | || |||| |||||| | | ||||| || Sbjct 1344216 CAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACGTTGTCTGACTACAAC 1344157 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| |||||| | | ||||| Sbjct 1344156 ATCCAGAAGGAGAGTACTCTCCACCTAGTTTTGCGTTTGAGGGGTGG 1344110 Score = 158 bits (174), Expect = 1e-33 Identities = 175/232 (75%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||||||||| ||||| || ||||| || || | ||||| ||| | | Sbjct 1344108 ATGCAAATTTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAGGTGGAGCCCAGC 1344049 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || || |||||||||||||| ||||| ||||||||| Sbjct 1344048 GACACTATCGAAAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 1343989 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || |||||||||||||| | || |||| |||||| | | ||||| || Sbjct 1343988 CAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACGTTGTCTGACTACAAC 1343929 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAG 27637 |||| ||||| ||||| || ||||| || ||| | | ||||| |||| Sbjct 1343928 ATCCAGAAGGAGAGTACTCTCCACCTAGTTTTACGTTTGAGGGGTGG-CAAG 1343878 Score = 131 bits (144), Expect = 2e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 || ||||| || || | ||||| ||| | | || | || | ||| | ||||| || Sbjct 1344537 GGTAAGACCATCACCTTGGAGGTGGAGCCCAGCGACACTATCGAAAACGTCAAGGCAAAG 1344478 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || |||||||||||||| ||||| ||||||||||||||| | || |||||||||||||| Sbjct 1344477 ATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGTTTGATCTTTGCTGGTAAGCAG 1344418 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 | || |||| |||||| | | ||||| || |||| ||||| |||||| || ||| Sbjct 1344417 TTGGAAGATGGTCGTACGTTGTCTGACTACAACATCCAGAAGGAGAGCACTCTCCACCTA 1344358 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 || |||||| | | ||||| Sbjct 1344357 GTTTTGCGTTTGAGGGGTGG 1344338 >seq11 Length=827912 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || | || || || || ||||| | ||||||||| | || Sbjct 716001 ATGCAGATTTTCGTTAAAACCTTAACGGGTAAAACCATTACATTGGAGGTTGAGCCCAGT 715942 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || || |||||||||||||| ||||| ||||||||| Sbjct 715941 GACACTATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 715882 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || |||||||||||||| | || |||| |||||| | | ||||| || Sbjct 715881 CAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACGTTGTCTGACTACAAC 715822 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| ||| |||| | ||| | | ||||| Sbjct 715821 ATCCAGAAGGAGAGTACTCTCCATTTAGTTCTACGTTTGAGGGGTGG 715775 >seq9 Length=2593320 Score = 96.9 bits (106), Expect = 4e-15 Identities = 182/262 (69%), Gaps = 8/262 (3%) Strand=Plus/Plus Query 31993 AAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATG 32052 ||||| |||| | |||||| | | || ||||| ||| ||||| | |||| ||| Sbjct 1027860 AAGCCAGGACAGAGGAAGGTGCTCTTCGGTTGCCTGAAGCGTAACCTAGTGGGTGA-ATG 1027918 Query 32053 -AAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGC 32111 |||||||| ||||| | || || || || || || | || || ||||| || || || Sbjct 1027919 TAAGGTGGCACAGCTCACAGGTTATGTCGCGGAACACTCTGCATACCACCATGGAGAAGC 1027978 Query 32112 GTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAA 32171 ||||| || |||||| |||| | || ||||||||||| || | || || | || Sbjct 1027979 TTCGCTGCAACAAACCATTATCAATATGGCACAGAACTTTGTAGGGTCCAACAATATCAA 1028038 Query 32172 CTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATG---CTGC 32228 | | | || |||| || |||||||| | ||| | ||||| ||||||| |||| Sbjct 1028039 CGTGTTGGAACCATGCGGTCAGTTTGGTAGCCGTAAGGAGGGTGGTAAGGATGCATCTGC 1028098 Query 32229 GAGCTCCCGTTACATCTTCACC 32250 || | ||||||||||||||| Sbjct 1028099 -AG--CGCGTTACATCTTCACC 1028117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310300195680