Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq11 122 5e-23 seq10 116 2e-21 >seq11 Length=827912 Score = 122 bits (134), Expect = 5e-23 Identities = 171/238 (72%), Gaps = 14/238 (6%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || | ||| | || ||||||||||| |||||||| || ||||| || || || Sbjct 715775 CCACCCCTCAAACGTAGAACTAAATGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGAC 715834 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | || ||||| ||||| || |||||||| ||||| || || Sbjct 715835 AACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 715894 Query 34600 ACTCCCTCCTTGTCTGTGATCTT----TTG---TTTTAACGATAAAATTGTGTCTTCGCT 34652 | ||||||||||| |||||| ||| |||| ||||| ||||| | Sbjct 715895 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTTT--CGATA-----GTGTCACTGGG 715947 Query 34653 CTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||| || |||| || || |||||||| ||||| ||||| || ||||||||||| ||| Sbjct 715948 CTCAACCTCCAATGTAATGGTTTTACCCGTTAAGGTTTTAACGAAAATCTGCATCTTG 716005 >seq10 Length=1797577 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || | |||||| || | |||||||| |||||||| || ||||| || || || Sbjct 1344110 CCACCCCTCAAACGCAAAACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGAC 1344169 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | || ||||| ||||| || |||||||| ||||| || || Sbjct 1344170 AACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 1344229 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| |||| || ||| | || ||||| | |||||| Sbjct 1344230 ATACCCTCCTTGTCCTGGATC-TTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCAC 1344288 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || ||||| || | || || |||||||| ||||| Sbjct 1344289 CTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAAATTTGCAT 1344336 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || | ||| || || | |||||||| |||||||| || ||||| || || || Sbjct 1343881 GCCACCCCTCAAACGTAAAACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGA 1343940 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || | ||||| | || ||||| ||||| || |||||||| ||||| || || Sbjct 1343941 CAACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGG 1344000 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| |||| || ||| | || ||||| | ||||| Sbjct 1344001 AATACCCTCCTTGTCCTGGATC-TTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCA 1344059 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| ||| || || ||||| || | || || |||||||| ||||| Sbjct 1344060 CCTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAAATTTGCAT 1344108 Score = 104 bits (114), Expect = 1e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || | |||||| || | ||||||||||||||||| || ||||| || || || Sbjct 1344338 CCACCCCTCAAACGCAAAACTAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGAC 1344397 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | || ||||| ||||| || |||||||| ||||| || || Sbjct 1344398 AACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 1344457 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| |||| || ||| | || ||||| | |||||| Sbjct 1344458 ATACCCTCCTTGTCCTGGATC-TTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCAC 1344516 Query 34659 TTCCACGGTTATCGTTTTACC 34679 |||| ||| || || ||||| Sbjct 1344517 CTCCAAGGTGATGGTCTTACC 1344537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729546299262