Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq10 98.7 7e-16 seq11 82.4 5e-11 >seq10 Length=1797577 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||||||||||| || || || | || || || || | Sbjct 1344336 ATGCAAATTTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAGGTGGAGCCCAGC 1344277 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || ||||| ||| || ||||| || ||| |||| || ||| Sbjct 1344276 GACACTATCGAAAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 1344217 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || || || || ||||| || || || ||||| || | || | ||||| || |||||| Sbjct 1344216 CAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACGTTGTCTGACTACAAC 1344157 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || ||||| ||| | || | |||||||||||| | || || Sbjct 1344156 ATCCAGAAGGAGAGTACTCTCCACCTAGTTTTGCGTTTGAGGGGTGG 1344110 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||||||||||| || || || | || || || || | Sbjct 1344108 ATGCAAATTTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAGGTGGAGCCCAGC 1344049 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || ||||| ||| || ||||| || ||| |||| || ||| Sbjct 1344048 GACACTATCGAAAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 1343989 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || || || || ||||| || || || ||||| || | || | ||||| || |||||| Sbjct 1343988 CAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACGTTGTCTGACTACAAC 1343929 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||| || ||||| ||| | || | ||||| |||||| | || ||| Sbjct 1343928 ATCCAGAAGGAGAGTACTCTCCACCTAGTTTTACGTTTGAGGGGTGGC 1343881 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || ||| |||| || ||||| || || || ||||| || || || ||||| Sbjct 1344471 GACAAGGAGGGTATTCCCCCAGACCAGCAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAA 1344412 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | ||||| || ||||||||||| || ||||||||| | || | |||||| Sbjct 1344411 GATGGTCGTACGTTGTCTGACTACAACATCCAGAAGGAGAGCACTCTCCACCTAGTTTTG 1344352 Query 28003 CGTTTGCGTGGCGG 28016 |||||| | || || Sbjct 1344351 CGTTTGAGGGGTGG 1344338 >seq11 Length=827912 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| ||||| || ||||| | || || ||| |||||| | || || || | Sbjct 716004 AAGATGCAGATTTTCGTTAAAACCTTAACGGGTAAAACCATTACATTGGAGGTTGAGCCC 715945 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||| | | || ||||| || || ||||| || ||| |||| || Sbjct 715944 AGTGACACTATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGAC 715885 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || || || ||||| || || || ||||| || | || | ||||| || ||| Sbjct 715884 CAGCAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACGTTGTCTGACTAC 715825 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||||| ||| | ||||| ||| | |||||| | || || Sbjct 715824 AACATCCAGAAGGAGAGTACTCTCCATTTAGTTCTACGTTTGAGGGGTGG 715775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862339280978