Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq11 82.4 7e-11 seq10 82.4 7e-11 >seq11 Length=827912 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || || |||| || ||||| || || ||||| || || || || || || | Sbjct 715775 CCACCCCTCAAACGTAGAACTAAATGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGAC 715834 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | || || | || || | ||| || || ||||| || | |||||||||||| | ||| Sbjct 715835 AACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 715894 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||| |||||| ||| || |||| | | | || || || | ||| || Sbjct 715895 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATAGTGTCACTGGGCTCAACC 715954 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 |||| || || |||| ||||| | |||||||| || || |||||||| Sbjct 715955 TCCAATGTAATGGTTTTACCCGTTAAGGTTTTAACGAAAATCTGCATCTT 716004 >seq10 Length=1797577 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| || || || ||||| || | || || || ||||| || || || || || || | Sbjct 1343881 GCCACCCCTCAAACGTAAAACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGA 1343940 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 | || || | || || | ||| || || ||||| || | |||||||||||| | ||| Sbjct 1343941 CAACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGG 1344000 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | | ||| |||||| ||| || |||| | | | || ||||| | |||||| Sbjct 1344001 AATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCAC 1344060 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || || || || || ||||| |||||||| Sbjct 1344061 CTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAAATTTGCAT 1344108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545526708782