Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq10 129 1e-24 seq14 89.7 1e-12 >seq10 Length=1797577 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 || ||||||||||| || || |||| ||||| || | ||| || | |||||||| Sbjct 1343900 ACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGACAACGTACGACCATCTTCC 1343959 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 | |||||| ||||| ||||| | || || ||||| || |||||||| |||||||| ||| Sbjct 1343960 AACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGG 1344019 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 |||||| ||| || |||||| ||||| || ||||| || || ||||| ||||| Sbjct 1344020 ATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTA 1344079 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || | ||| || | || | |||||| Sbjct 1344080 CCAGTAAGAGTCTTGACAAAAATTTGCAT 1344108 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 || ||||||||||| || || |||| ||||| || | ||| || | |||||||| Sbjct 1344128 ACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGACAACGTACGACCATCTTCC 1344187 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 | |||||| ||||| ||||| | || || ||||| || |||||||| |||||||| ||| Sbjct 1344188 AACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGG 1344247 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 |||||| ||| || |||||| ||||| || ||||| || || ||||| ||||| Sbjct 1344248 ATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTA 1344307 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || | ||| || | || | |||||| Sbjct 1344308 CCAGTAAGAGTCTTGACAAAAATTTGCAT 1344336 Score = 125 bits (138), Expect = 2e-23 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 || |||||||||||| || || |||| ||||| || | ||| || | |||||||| Sbjct 1344356 ACTAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAACGTACGACCATCTTCC 1344415 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 | |||||| ||||| ||||| | || || ||||| || |||||||| |||||||| ||| Sbjct 1344416 AACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGG 1344475 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 |||||| ||| || |||||| ||||| || ||||| || || ||||| ||||| Sbjct 1344476 ATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTA 1344535 Query 225685 CC 225686 || Sbjct 1344536 CC 1344537 >seq14 Length=35107 Score = 89.7 bits (98), Expect = 1e-12 Identities = 107/143 (75%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794 ||||||||||| |||| | | |||||||||||| ||||| || | ||| || || | Sbjct 532 TTGGTAAGATTTTTTGGGCTGCATCAAATTAAACAACATAGCTCATCACTTGTATAAGTT 591 Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTT-ACG 7853 ||||||||| |||||| ||| | |||||| ||| | ||||| ||||||||| ||| Sbjct 592 CCCGTCAGTTCCTTTGAATTTGACTCTTGCGAGTGTACTCTTCAGGCGGAATATTTAACG 651 Query 7854 CGTTAGCTTAATTAATATAAAAA 7876 ||| ||| | ||| |||||| Sbjct 652 TATTAACTT--TAAATTTAAAAA 672 Score = 89.7 bits (98), Expect = 1e-12 Identities = 107/143 (75%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794 ||||||||||| |||| | | |||||||||||| ||||| || | ||| || || | Sbjct 33831 TTGGTAAGATTTTTTGGGCTGCATCAAATTAAACAACATAGCTCATCACTTGTATAAGTT 33890 Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTT-ACG 7853 ||||||||| |||||| ||| | |||||| ||| | ||||| ||||||||| ||| Sbjct 33891 CCCGTCAGTTCCTTTGAATTTGACTCTTGCGAGTGTACTCTTCAGGCGGAATATTTAACG 33950 Query 7854 CGTTAGCTTAATTAATATAAAAA 7876 ||| ||| | ||| |||||| Sbjct 33951 TATTAACTT--TAAATTTAAAAA 33971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530986089716