Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2 129 8e-25 seq10 98.7 1e-15 >seq2 Length=821816 Score = 129 bits (142), Expect = 8e-25 Identities = 447/687 (65%), Gaps = 9/687 (1%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 || || ||||| ||||||||||||| || ||| | || |||| |||||||||| || | Sbjct 732627 TCGAACTCATCACCCCAAACATCATATAAGCCACGGCACTCATCGGGACACATCAGTGTC 732686 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || ||||| | || ||| || |||||||| || ||||| ||||| | |||| || Sbjct 732687 CAGTCACCGTTGGACTCAACACGCTTCATAAACAGGTCAGGAATCCACAAAGCATAGAAC 732746 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 | ||| |||| | | ||| ||| || ||||| | || || || |||||| Sbjct 732747 AAATCACGGGCGCGAGCTTCCTCAGCACCGTGGTTCTTGCGCAAGTCCAGAAAGTCCATA 732806 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 || |||| ||||||||| || || || || || | ||| || || ||| ||| Sbjct 732807 ATGTCAGCATGCCATGGCTCAAGGTAGATGGCAAAGGAACCTTTACGCTTGCCACCACCC 732866 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819 || || | ||| | |||||| || | | | |||||||| | | ||||| Sbjct 732867 TGGTCAACATAACGAGCAGTGGAGTTGAATATACGTAACATTGGGACTAGACCGTTGCTC 732926 Query 76820 GTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCT 76879 | || || || ||| ||| ||| |||| || | || || | || ||||| Sbjct 732927 TTGCCGTTGGTACCACGAATGTAAGCGCCACTGGCCCTGATCTTGTGACAAGCAAGGCCA 732986 Query 76880 ATTCCTCCTGC-CATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTC 76938 || || || || || || | || | ||||| | |||| || || | || || | Sbjct 732987 ATACCACCAGCACACTTGCTA-ATGAAGGCACACTGGGTCAAAGTCTCGAAAATACCAGC 733045 Query 76939 TATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 76998 | |||||| |||||| || | ||||| || ||||| ||| | || ||| || Sbjct 733046 CAAGGAGTCATCCTTCATGTCCAGTAAGAAACAACTGGACATCTGAGGTCGAGGAGTACC 733105 Query 76999 TGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGT 77058 | ||||| || |||| ||||||||||| | || | | | | | ||| || Sbjct 733106 GGAGAAGAACAAGGTGGGAGTCGCATGAGTGAAGTACTTCTGACTCATCAAGTGGTAGGT 733165 Query 77059 TTCAAT--AACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAACAT 77115 | ||| || || || || || ||| || || || || ||| |||||||| ||||| Sbjct 733166 CTGAATGGTAC-GC-TCAATGTCACCAGTG-TGGATACCAGCAGATACACGCATTAACAT 733222 Query 77116 ATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 77175 || ||||| || || || |||| | |||||| | || || || |||||||| Sbjct 733223 GTGTTGAGGACGCTCCACTATCTTGTCATTTATACGAAGTAAATAGGAACGCTCCAAAGT 733282 Query 77176 TTTAAAACCAAAATAGTTGTA-TGAAA 77201 || |||||||| |||| ||| ||||| Sbjct 733283 CTTCAAACCAAAGTAGTCGTACTGAAA 733309 >seq10 Length=1797577 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 || |||||| ||||||| || || ||||| || || ||| | |||||| ||| Sbjct 1461230 ATGAAACATCCAAAATCTGCGTGTAGTCCTTCGTCCCTTGCAATAAGTTCGTTGCTAAAG 1461289 Query 46684 GTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAA 46743 || | ||| ||||| || ||||| ||||| |||||||||||||| ||| ||||||| Sbjct 1461290 GTCAACCCTGGCATGAGACCACGTTTTTTAAGCCAAAATATAGCACAAAAACTTCCAGAA 1461349 Query 46744 AAGAATATGCCTTCTACAGCCGCGAATGCGAC 46775 || ||||||||||| || || || |||| || Sbjct 1461350 AAAAATATGCCTTCAACTGCTGCATATGCAAC 1461381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934275236480