Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq11 150 4e-31 seq10 150 4e-31 >seq11 Length=827912 Score = 150 bits (166), Expect = 4e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || || || || | ||| | || || || || |||||||||||||||| Sbjct 715774 ACCACCCCTCAAACGTAGAACTAAATGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGA 715833 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||| || ||||| || | || || || |||||||||||||| || ||||| || Sbjct 715834 CAACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGG 715893 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| |||||||| || || || | ||||||||||| | || || Sbjct 715894 AATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATAGTGTCACTGGGCTCAAC 715953 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | || || || |||||||| || || |||||||| |||||||| || Sbjct 715954 CTCCAATGTAATGGTTTTACCCGTTAAGGTTTTAACGAAAATCTGCATCTT 716004 >seq10 Length=1797577 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || || | || || || | || || || || |||||||||||||||| Sbjct 1344109 ACCACCCCTCAAACGCAAAACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGA 1344168 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||| || ||||| || | || || || |||||||||||||| || ||||| || Sbjct 1344169 CAACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGG 1344228 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| ||||||||||| || ||| | ||||||||||| | || || Sbjct 1344229 AATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCAC 1344288 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| |||||||| || | |||||| || || || ||||| Sbjct 1344289 CTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAAATTTGCAT 1344336 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCG 282962 || || || || |||||||||||||||| | ||| || ||||| || | || || || Sbjct 1343912 GTACTCTCCTTCTGGATGTTGTAGTCAGACAACGTACGACCATCTTCCAACTGCTTACCA 1343971 Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTT 283022 |||||||||||||| || ||||| ||||||||||||||||| ||||||||||| || Sbjct 1343972 GCAAAGATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTTGCCTTG 1344031 Query 283023 ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTC 283082 ||| | ||||||||||| | || || || | ||||| |||||||| || | |||| Sbjct 1344032 ACGTTTTCGATAGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTACCAGTAAGAGTC 1344091 Query 283083 TTAACGAATATCTGCAT 283099 || || || || ||||| Sbjct 1344092 TTGACAAAAATTTGCAT 1344108 Score = 138 bits (152), Expect = 2e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || || | || || || | ||||| || || |||||||||||||||| Sbjct 1344337 ACCACCCCTCAAACGCAAAACTAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGA 1344396 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||| || ||||| || | || || || |||||||||||||| || ||||| || Sbjct 1344397 CAACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGG 1344456 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| ||||||||||| || ||| | ||||||||||| | || || Sbjct 1344457 AATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCAC 1344516 Query 283052 TTCGAGAGTGATCGTCTTACC 283072 || | ||||| |||||||| Sbjct 1344517 CTCCAAGGTGATGGTCTTACC 1344537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046739012241156