Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq10 129 5e-25 seq11 118 1e-21 >seq10 Length=1797577 Score = 129 bits (142), Expect = 5e-25 Identities = 173/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 41629 ATCACC--GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTA 41686 |||||| ||| || | | |||||| || || || || || ||||||||||| ||||| Sbjct 1343873 ATCACCTTGCCACCCCTCAAACGTAAAACTAGGTGGAGAGTACTCTCCTTCTGGATGTTG 1343932 Query 41687 TAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGG 41746 ||||| || | || || | || || | |||||| || || || |||| ||||| ||| Sbjct 1343933 TAGTCAGACAACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGG 1343992 Query 41747 TCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCT 41805 || | ||||| | |||||||||| || | ||||| | ||| | | ||||||||| Sbjct 1343993 TCTGGGGGAATACCCTCCTTGTCC-TGGATCTTTGCCTTGACGTTTTCGATAGTGTCGCT 1344051 Query 41806 CGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||||||||||| || || || ||||| || || ||||| || ||||| ||||| Sbjct 1344052 GGGCTCCACCTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAAATTTGCAT 1344108 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| || || || || || || ||||||||||| ||||| ||||| || | || || | Sbjct 1344121 ACGCAAAACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGACAACGTACGACC 1344180 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || || | |||||| || || || |||| ||||| ||||| | ||||| | |||||| Sbjct 1344181 ATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTT 1344240 Query 41767 GTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTA 41825 |||| || | ||||| | ||| | | ||||||||| | ||||||||||| || | Sbjct 1344241 GTCC-TGGATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCACCTCCAAGGTGA 1344299 Query 41826 TCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || ||||| || || ||||| || ||||| ||||| Sbjct 1344300 TGGTCTTACCAGTAAGAGTCTTGACAAAAATTTGCAT 1344336 Score = 105 bits (116), Expect = 6e-18 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| || || || || || |||||||||||||| ||||| ||||| || | || || | Sbjct 1344349 ACGCAAAACTAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAACGTACGACC 1344408 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || || | |||||| || || || |||| ||||| ||||| | ||||| | |||||| Sbjct 1344409 ATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTT 1344468 Query 41767 GTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTA 41825 |||| || | ||||| | ||| | | ||||||||| | ||||||||||| || | Sbjct 1344469 GTCC-TGGATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCACCTCCAAGGTGA 1344527 Query 41826 TCGTTTTACC 41835 | || ||||| Sbjct 1344528 TGGTCTTACC 1344537 >seq11 Length=827912 Score = 118 bits (130), Expect = 1e-21 Identities = 160/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||||| || | ||| || || ||||||||||| ||||| ||||| || | || || | Sbjct 715786 ACGTAGAACTAAATGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGACAACGTACGACC 715845 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || || | |||||| || || || |||| ||||| ||||| | ||||| | |||||| Sbjct 715846 ATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTT 715905 Query 41767 GTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||| ||| || ||| || || | |||||| || | ||| ||||||| || Sbjct 715906 GTCCTGGATCTTGGCCTTGACATTTTCG--ATAGTGTCACTGGGCTCAACCTCCAATGTA 715963 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||||||||| | || || |||||||||||||| || Sbjct 715964 ATGGTTTTACCCGTTAAGGTTTTAACGAAAATCTGCATCTT 716004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303919096800