Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq190 136 4e-27 >seq190 Length=1127857 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||||||||| || | || ||||||||||| || | || ||||| ||| Sbjct 280526 ATGCAAATATTCGTAAAGACTTTGACCGGCAAAACCATTACTTTGGAGGTCGAGCCCAGT 280585 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| |||||| || |||| || || ||||| || ||| | ||||| Sbjct 280586 GACACTATCGAAAACG-TCAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCA 280644 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | |||||||| ||||| || || | |||||||| |||||||| Sbjct 280645 GCAGCGTCTGATTTTTGCGGGCAAGCAGCTTGAAGATGGCCGCACCCTTTCTGACTACAA 280704 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||| |||||| ||| || || |||||| | || | ||||| ||| Sbjct 280705 TATCCAAAAGGAGAGCACACTTCACCTAGTGCTTCGTCTCAGGGGAGGC 280753 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||||||||| || | || ||||||||||| || | || ||||| ||| Sbjct 281165 ATGCAAATATTCGTAAAGACTTTGACCGGCAAAACCATTACTTTGGAGGTCGAGCCCAGT 281224 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| |||||| || |||| || || ||||| || ||| | ||||| Sbjct 281225 GACACTATCGAAAACG-TCAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCA 281283 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | |||||||| ||||| || || | |||||||| |||||||| Sbjct 281284 GCAGCGTCTGATTTTTGCGGGCAAGCAGCTTGAAGATGGTCGCACCCTTTCTGACTACAA 281343 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || || |||||| ||| || || |||||| | || | ||||| ||| Sbjct 281344 TATTCAAAAGGAGAGCACTCTTCACCTAGTGCTTCGTCTCAGGGGTGGC 281392 Score = 102 bits (112), Expect = 8e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGT-GCAAACGCTCAAGGAAAA 40775 || || ||||| ||| | || ||||| ||| |||| | | ||||| |||||| || Sbjct 626508 GGTAAGACCATTACCTTGGAGGTCGAGCCCAGTGACACTATCGAAAACG-TCAAGGCCAA 626566 Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835 |||| || || ||||| || ||| | |||||||| || || || | |||||||| || Sbjct 626567 GATTCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGCGTCTGATTTTTGCGGGCAAGCA 626626 Query 40836 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 ||| || || | || || || |||||||||||||| |||||| ||| || || || Sbjct 626627 GCTTGAAGATGGCCGTACTCTTTCGGACTACAACATCCAAAAGGAGAGCACTCTTCACCT 626686 Query 40896 AGTGTTGCGCTTGAGGGGCGGCGGCTTG 40923 |||| | || | ||||| ||| |||| Sbjct 626687 AGTGCTTCGTCTCAGGGGGGGCTCCTTG 626714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515215889716640