Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq190 100 3e-16 seq232 87.8 2e-12 >seq190 Length=1127857 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| |||||||||||| |||| |||||||| || || | || || || || Sbjct 281164 CATGCAAATATTCGTAAAGACTTTGACCGGCAAAACCATTACTTTGGAGGTCGAGCCCAG 281223 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||||| ||||| | || ||| ||||| || | || || ||||| Sbjct 281224 TGACACTATCGAAAACGTCAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCA 281283 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || || ||||| ||| | ||||| | || | || || || Sbjct 281284 GCAGCGTCTGATTTTTGCGGGCAAGCAGCTTGAAGATGGTCGCACCCTTTCTGACTACAA 281343 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| || |||||||| || || ||| | || ||||| || Sbjct 281344 TATTCAAAAGGAGAGCACTCTTCACCTAGTGCTTCGTCTCAGGGGTGG 281391 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| |||||||||||| |||| |||||||| || || | || || || || Sbjct 280525 CATGCAAATATTCGTAAAGACTTTGACCGGCAAAACCATTACTTTGGAGGTCGAGCCCAG 280584 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||||| ||||| | || ||| ||||| || | || || ||||| Sbjct 280585 TGACACTATCGAAAACGTCAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCA 280644 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| || || || ||||| ||| | ||||| Sbjct 280645 GCAGCGTCTGATTTTTGCGGGCAAGCAGCTTGAAGA 280680 >seq232 Length=639093 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 22444 CAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGA 22503 ||| || |||| ||||| ||||| ||| | || ||||| | |||||||||| Sbjct 595442 CAGGTGGGGGTTTACCACAAAGAACTCTCCGCTAAGCACACGGCGGTAGTAAATGTTGCT 595383 Query 22504 TGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCAT 22563 ||| | || ||||| || || ||||||||||| || || | ||||| ||||||||||| Sbjct 595382 GGTGTATGGCTCGAAGGACTCGTTGTTTCCCAGGATTTGGGATGTCGATGCGGTCGGCAT 595323 Query 22564 CGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTT 22599 || |||| | | |||||| | || |||||||| Sbjct 595322 GGGGGCCAGGAACAACGAGTTACGCAGACCGTGCTT 595287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763535950880