Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq232 149 2e-30 >seq232 Length=639093 Score = 149 bits (164), Expect = 2e-30 Identities = 608/942 (65%), Gaps = 20/942 (2%) Strand=Plus/Plus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 || || | |||||| | ||| || ||||| |||||| || | | || | || Sbjct 593949 TTTGGTTTTAAGACTCTTGAGCGGTCATACCTTCTTCGTATAAACGACAAGATCGCAGAG 594008 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 ||||||||||| ||||||||| | ||||| || || || || || | || Sbjct 594009 CGCCCGCAGCACATGTTAATGAGAGTTGCGGCAGGCATTCACTGTGGAGACATCGAGCGT 594068 Query 363511 GCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATT-CACGCACGCCACGCCAACAAT 363569 ||||| | |||||| | || | ||| | ||||| ||| || || ||||| || | Sbjct 594069 ACGATTCAGACATATCACCTGATGAGT-CAGAAGTATTTCACCCATGCTACGCCGACGTT 594127 Query 363570 GTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAA-ATGAAGG 363628 || | || || | | ||||| ||||| ||| |||||| | | ||||| | Sbjct 594128 GTTTTTCTCCGGTACCCAAAGGCCACAAATGTCGAGTTG-TTTCTTGTTGGATATGAAAG 594186 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 | || || | | ||||||||||| ||| | | | | || || | || |||| || Sbjct 594187 ATGACTCATTAGCTGGTATCTTTGAGACATTGACGCAGTGCGCATTCATCAGCAAGTGTG 594246 Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGT-TACATTCGCGGC 363747 | ||||| || || | | ||||| | | || ||| | ||||| || ||| Sbjct 594247 CTGGCGGTATAGGCCTTGCCTGTCACAAAATAAGGGC-CAGTGGGGCGTACATCCGTGGC 594305 Query 363748 AC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAAT---ACTGC 363803 || | |||| | ||||| | || || ||| | ||| | || |||| ||||| Sbjct 594306 ACCAATGGGAAGAGC-AATGGTATTGTGCCAATGTTGCGTATATT---CAATGCAACTGC 594361 Query 363804 GAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCC 363863 ||||| || ||||||||||| || |||||||| ||| | ||||| || || | || || Sbjct 594362 AAGGTATGTAGACCAGGGTGGTGGCAAGCGCAAGGGGTCATTTGCCATATACATGGAACC 594421 Query 363864 TCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATT 363923 || || ||||| | || || || || | |||||||| ||| |||||| Sbjct 594422 ATGGCACGCTGATATCATGGATTTCCTGGACTTGCGGAAAAATCATGGATCCGAGGAAAG 594481 Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983 ||||||||||| || ||||||||||| ||| || | || | ||||||||||| || || Sbjct 594482 CCGTGCACGTGACCTATTCTATGCACTGTGGATTCCGGATCTGTTTATGAAGCGTGTCGA 594541 Query 363984 GGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATG 364043 ||| | | ||| | || | ||||| | || || | || || | ||||| || Sbjct 594542 AGCAAATGGCGACTGGACCCTAATGTGCCCTGATGAGTGCCGCGGACTGTATGATGTTTG 594601 Query 364044 GGGTGACGACTATGTTGC--TCTATACGAAAAGTATGAA-TCGGAGGGAAAGGCTCGTAA 364100 |||||| || | | || | ||||| ||| |||||| | || |||| || || Sbjct 594602 GGGTGATGAGTTCGAAGCGTTATATACCAAA--TATGAACAAGCCGGCTTAGGC-CGCAA 594658 Query 364101 GACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAAC 364160 || ||||| || || | || |||||||| || | | || || || || || | Sbjct 594659 AACTATTCCTGCCCAAACACTTTGGTTTGCTATTCTCCAAAGTCAAATCGAAACCGGTAA 594718 Query 364161 ACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTAC 364220 || | |||| | ||||| ||| | ||||| ||||| ||||| ||| |||| || || Sbjct 594719 CCCTTTTATGCTTTACAAGGATGCATGCAATGCAAAGTCTAACCAACAGAACCTGGGAAC 594778 Query 364221 AATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGC 364280 || || ||||| || ||||| | | ||||| | || || ||| || Sbjct 594779 CATCAAGTCATCTAACCTGTGCTGTGAGATCGTACAGTACACATCCCCAGAAGAGGTGGC 594838 Query 364281 CGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA 364322 || || ||||| || || || ||||| ||| || ||| || Sbjct 594839 AGTGTGCAACCTGGCTTCCATTGCGCTGCCGATGTATGTGAA 594880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303345016601948