Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq54 127 1e-24 seq395 111 1e-19 seq190 105 4e-18 >seq54 Length=10339 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| |||||||||| | |||||||| || |||||||| Sbjct 2093 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATGGCAGATAGGGACAGTGGGAATCTCGT 2152 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2153 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2187 >seq395 Length=1074093 Score = 111 bits (122), Expect = 1e-19 Identities = 84/96 (88%), Gaps = 6/96 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCT-GTGGTTTCGCTAGATAGTAGATAGGG----GGTAATCTCGT 25956 |||||||||||||||||| |||| |||||||||| | ||||||| || |||||||| Sbjct 640409 AAGCCCGTTCCCTTGGCTTGTGGGTTCGCTAGATGGCAGATAGGACAGTGGGAATCTCGT 640468 Query 25957 TAATCCTTTCATGCGCGTCAC-TAATTAGATGACGA 25991 |||||| |||||||||||||| |||||||||||||| Sbjct 640469 TAATCCATTCATGCGCGTCACATAATTAGATGACGA 640504 >seq190 Length=1127857 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| || | ||| | ||| | ||||||||||||||||||||||||||||| ||||| Sbjct 281391 CCACCCCTGAGACGAAGCACTAGGTGAAGAGTGCTCTCCTTTTGAATATTGTAGTCAGAA 281332 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || || ||||| || || || || || || | ||| Sbjct 281331 AGGGTGCGACCATCTTCAAGCTGCTTGCCCGCAAAAATCAGACGCTGCTGGTCTGGGGGA 281272 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || || ||| ||| || ||| || || | || ||| || | || || Sbjct 281271 ATACCCTCCTTATCCTGAATCTTGGCCTTGACGTTTTCGATAGTGTCACTGGGCTCGACC 281212 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || ||||| ||||| || ||||| || || |||||||| |||||| Sbjct 281211 TCCAAAGTAATGGTTTTGCCGGTCAAAGTCTTTACGAATATTTGCATG 281164 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || || | ||| | ||| | ||||| |||||||||||||| |||||||| ||||| Sbjct 280752 CCTCCCCTGAGACGAAGCACTAGGTGAAGTGTGCTCTCCTTTTGGATATTGTAGTCAGAA 280693 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || || ||||| || || || || || || | ||| Sbjct 280692 AGGGTGCGGCCATCTTCAAGCTGCTTGCCCGCAAAAATCAGACGCTGCTGGTCTGGGGGA 280633 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || || ||| ||| || ||| || || | || ||| || | || || Sbjct 280632 ATACCCTCCTTATCCTGAATCTTGGCCTTGACGTTTTCGATAGTGTCACTGGGCTCGACC 280573 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || ||||| ||||| || ||||| || || |||||||| |||||| Sbjct 280572 TCCAAAGTAATGGTTTTGCCGGTCAAAGTCTTTACGAATATTTGCATG 280525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945101765134