Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq190 132 1e-25 >seq190 Length=1127857 Score = 132 bits (146), Expect = 1e-25 Identities = 172/235 (73%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || | ||| | ||| || || |||| ||||| || ||||||||||| |||| Sbjct 280756 CATG-CCTCCCCTGAGACGAAGCACTAGGTGAAGTGTGCTCTCCTTTTGGATATTGTAGT 280698 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || ||||| | || || || || || ||||||||||| || | Sbjct 280697 CAGAAAGGGTGCGGCCATCTTCAAGCTGCTTGCCCGCAAAAATCAGACGCTGCTG---GT 280641 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| || || || |||||||| || || || || |||||||| |||| || || | Sbjct 280640 CTGGGGGAATACCCTCCTTATCCTGAATCTTGGCCTTGACGTTTTCGATAGTGTCACTGG 280581 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | || || || || ||||||| |||||| |||||||| ||||| Sbjct 280580 GCTCGACCTCCAAAGTAATGGTTTTGCCGGTCAAAGTCTTTACGAATATTTGCAT 280526 Score = 132 bits (146), Expect = 1e-25 Identities = 182/249 (73%), Gaps = 9/249 (4%) Strand=Plus/Minus Query 288229 ATGATGATTC-ATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTT 288287 |||| | ||| ||| ||| ||||| | ||| | ||| || || |||| ||||| || || Sbjct 281408 ATGAAGGTTCGATA-ATG-CCACCCCTGAGACGAAGCACTAGGTGAAGAGTGCTCTCCTT 281351 Query 288288 TTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAG 288347 ||| ||||| ||||| | || ||||| || ||||| | || || || || || ||||| Sbjct 281350 TTGAATATTGTAGTCAGAAAGGGTGCGACCATCTTCAAGCTGCTTGCCCGCAAAAATCAG 281291 Query 288348 ACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTC 288404 |||||| || |||||| || || || |||||||| || || || || |||||||| Sbjct 281290 ACGCTGCTG---GTCTGGGGGAATACCCTCCTTATCCTGAATCTTGGCCTTGACGTTTTC 281234 Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 |||| || || | || || || | || || || || ||||||| |||||| ||||| Sbjct 281233 GATAGTGTCACTGGGCTCGACCTCCAAAGTAATGGTTTTGCCGGTCAAAGTCTTTACGAA 281174 Query 288465 TATCTGCAT 288473 ||| ||||| Sbjct 281173 TATTTGCAT 281165 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | ||| | ||| || || |||| ||||| || |||||||| || ||||| | Sbjct 626707 CCCCCCCTGAGACGAAGCACTAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCCGAA 626648 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | || || || || || ||||||||||| || |||||| Sbjct 626647 AGAGTACGGCCATCTTCAAGCTGCTTGCCCGCAAAAATCAGACGCTGCTG---GTCTGGG 626591 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || |||||||| || || || || |||||||| |||| || || | || Sbjct 626590 GGAATACCCTCCTTATCCTGAATCTTGGCCTTGACGTTTTCGATAGTGTCACTGGGCTCG 626531 Query 288424 ACTTCGAGCGTGATCGTCTTCCC 288446 || || | || || ||||| || Sbjct 626530 ACCTCCAAGGTAATGGTCTTACC 626508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179646631238492