Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq232 98.7 9e-16 seq190 86.0 6e-12 >seq232 Length=639093 Score = 98.7 bits (108), Expect = 9e-16 Identities = 248/373 (66%), Gaps = 8/373 (2%) Strand=Plus/Plus Query 124137 AATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCG 124196 || || ||||||||| || | | || | ||||| | | ||||||| ||||||||||| Sbjct 595248 AAGTTATGGGACTGGGACGATCTTAAGCGCCGCATGGCCAAGCACGGTCTGCGTAACTCG 595307 Query 124197 CTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCC 124256 |||| |||| ||||||||| ||| | || | ||||| | ||||||||||| ||| Sbjct 595308 TTGTTCCTGGCCCCCATGCCGACCGCATCGACATCCCAAATCCTGGGAAACAACGAGTCC 595367 Query 124257 TTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTG-TTAGCCGGCGATTTTCAAGT 124315 |||||||| | ||| | ||| | ||| || || ||| |||| ||| || || || Sbjct 595368 TTCGAGCCATACACCAGCAACATTTACTACCGCCGTGTGCTTAG-CGGAGAGTTCTTTGT 595426 Query 124316 GATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATGCG 124375 | |||| | || || | ||| | |||| ||| | | || ||| ||| Sbjct 595427 GGTAAACCCCCACCTGCTACGGGACCTCGTGGATTTAGGGCTCTGGGACGAAGCTATG-- 595484 Query 124376 CAACGAAA---TTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAACA 124432 || |||| | ||||| || | || || ||||| ||||| |||| Sbjct 595485 -AAGGAAAAGCTGATTGCCTATAACGGTTCCTTGAGGCACATCGAGGGTATTCCTCAACA 595543 Query 124433 CGTCAAGCAACTGTACAAAACCGTGTGGGAAATGAAAAATAAACGATTAATTGAAATGGC 124492 | ||||| | |||||||| || ||||||||||| ||| | ||| | ||||| ||||| Sbjct 595544 CATCAAGGACCTGTACAAGACAGTGTGGGAAATAAAACAGAAAACTATCATTGATATGGC 595603 Query 124493 CGTCGACCGAGGC 124505 | || || ||| Sbjct 595604 AGCAGATCGTGGC 595616 >seq190 Length=1127857 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | |||||| || || || |||||||||||||| || || Sbjct 280755 ATGCCTCCCCTGAGACGAAGCACTAGGTGAAGTGTGCTCTCCTTTTGGATATTGTAGTCA 280696 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || || | |||| || |||||||| || Sbjct 280695 GAAAGGGTGCGGCCATCTTCAAGCTGCTTGCCCGCAAAAATCAGACGCTGCTGGTCTGGG 280636 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || ||||| ||||| || |||| ||| | ||||| | |||| Sbjct 280635 GGAATACCCTCCTTATCCTGAATCTTGGCCTTGACGTTTTCGATAGTGTCACTGGGCTCG 280576 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||||| ||||||||||| | ||| ||||| || |||||||| Sbjct 280575 ACCTCCAAAGTAATGGTTTTGCCGGTCAAAGTCTTTACGAATATTTGCAT 280526 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 |||||| || || || |||||||| ||||| || || | ||| | ||| || Sbjct 281374 CACTAGGTGAAGAGTGCTCTCCTTTTGAATATTGTAGTCAGAAAGGGTGCGACCATCTTC 281315 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || || || || | |||| || |||||||| || ||||| || || ||||| || Sbjct 281314 AAGCTGCTTGCCCGCAAAAATCAGACGCTGCTGGTCTGGGGGAATACCCTCCTTATCCTG 281255 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||| || |||| ||| | ||||| | |||||| || | ||||| ||||| Sbjct 281254 AATCTTGGCCTTGACGTTTTCGATAGTGTCACTGGGCTCGACCTCCAAAGTAATGGTTTT 281195 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| | ||| ||||| || |||||||| Sbjct 281194 GCCGGTCAAAGTCTTTACGAATATTTGCAT 281165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000295879440