Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq232 201 1e-46 >seq232 Length=639093 Score = 201 bits (222), Expect = 1e-46 Identities = 1038/1644 (63%), Gaps = 29/1644 (2%) Strand=Plus/Minus Query 115564 TAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTG 115623 ||||| | ||| |||||||| |||| |||||| |||| | ||||| | | ||| Sbjct 595732 TAGTAAACCCCGGTCTTGAGTCCCTTCTTCCATCCATAGAAGTGCATGCTCGTGAGTTTG 595673 Query 115624 GAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCC 115683 || | || |||| ||| ||| | |||||| ||||| || || || Sbjct 595672 CCGAAGGAAGGCTGCTCCAGATAGATGTTGAGCGATTGGGACTGATCAATAAATATGCCA 595613 Query 115684 CGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGG 115743 ||||| || ||||||||||| | | ||| || ||||||||||| || |||| ||| Sbjct 595612 CGATCTGCTGCCATATCAATGATAGTTTTCTGTTTTATTTCCCACACTGTCTTGTACAGG 595553 Query 115744 TTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATG 115803 | ||| || | | || ||| || |||| | | | || ||| | | | || Sbjct 595552 TCCTTGATGTGTTGAGGAATACCCTCGATGT---GCCTCAAGGAACCGTTATAGGCAATC 595496 Query 115804 AGAT---CCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGC 115860 || | |||||||| | | |||||| || | | | ||| ||| | ||||| Sbjct 595495 AGCTTTTCCTTCATAGCTTCGTCCCAGAGCCCTAAATCCACGAGGTCCCGTAGCAGGTGG 595436 Query 115861 TTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTAT 115920 || || |||| ||||| || || || | || |||||| | |||||| Sbjct 595435 GGGTTTACCACAAAGAACTCTCCGCTAAGCACACGGCGGTAGTAAATGTTGCTGGTGTAT 595376 Query 115921 GGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCC 115980 ||||| ||| |||| ||||| |||| |||||||| ||| || || || |||||||| ||| Sbjct 595375 GGCTCGAAGGACTCGTTGTTTCCCAGGATTTGGGATGTCGATGCGGTCGGCATGGGGGCC 595316 Query 115981 ATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCG 116040 | || | ||| || ||||| | ||||| ||| || |||||||||| Sbjct 595315 AGGAACAACGAGTTACGCAGACCGTGCTTGGCCATGCGGCGCTTAAGATCGTCCCAGTCC 595256 Query 116041 TAGTTGAGCT-TTGTCTCCC----CCTCCCACATATCAAACTGGAGGATACCTTGGGACG 116095 | | | | ||||| | | |||| | || ||||| || | |||| || | Sbjct 595255 CA--TAACTTGTTGTCCACAGTGGCGCCCCAAAGGTCGAACTGCAGCTTGCCTTTTGAGG 595198 Query 116096 CTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCT--CGC 116153 ||||||||||| | | |||||| | || ||| || ||||| || | | | Sbjct 595197 CTGGCGATCCCGGGTACGACTCATACGTACCATCACGTTCGGCCAA--CGAAATAGACTC 595140 Query 116154 CTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTC 116213 || || ||| || || ||||| || || || || | | ||||||| || || Sbjct 595139 ATCCAGACAACCGTAGTAAATCGTCTCGAATATACGGCGGTTAAGTTCCTTGGCTTCCTC 595080 Query 116214 GGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCC 116273 || || |||| | || || ||||| ||||| | ||| || || || | || Sbjct 595079 AGATTCGAACGGGTAGCGCATCAGCATAAAGGTGTCCGCCAAACCCTGCACTCCTACACC 595020 Query 116274 AATTGGGCGATGTCTCATATTAGACT--TTCGAGCGGTCTCCACGGGATAAAAATTCCTA 116331 ||| || | || | ||| ||| |||| | | ||| ||||| | || || Sbjct 595019 AATAGGTCTGTGGCGATGATTGGACACCTTCG--CCTCCGGCACAGGATAGTAGTTTCTG 594962 Query 116332 TCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAA 116391 || || | | || || || | || | || | || ||| | | ||||| | | Sbjct 594961 TCAATGATTTTGTTGAGGTTGTATGTAATGACACGGGAGACTTCGTACAACTTTTGGAAG 594902 Query 116392 TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACAC 116451 || | |||| || || | || |||||| | || || || || || ||||| || ||| Sbjct 594901 TCGTACGTGCGGGTTTCCTTGTTCACATACATCGGCAGCGCAATGGAAGCCAGGTTGCAC 594842 Query 116452 ACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTA 116511 || | ||| || ||||||| || || || |||| || || ||| Sbjct 594841 ACTGCCACCTCTTCTGGGGATGTGTACTGTACGATCTCACAGCACAGGTTAGATGACTTG 594782 Query 116512 ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATAT 116571 ||||| |||| ||||| ||| || ||||||| || || ||||||||||| |||||| | Sbjct 594781 ATGGTTCCCAGGTTCTGTTGGTTAGACTTTGCATTGCATGCATCCTTGTAAAGCATAAAA 594722 Query 116572 GGCGTCCCCGTCTCCGTTTGGGACTT--GAGAATAGCCTTCCATACATCGGCGGCTGGCA 116629 || | || || || |||| |||| ||||||||| ||| | ||| || | Sbjct 594721 GGGTTACCGGTTTCGATTTG--ACTTTGGAGAATAGCAAACCAAAGTGTTTGGGCAGGAA 594664 Query 116630 CAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCAC 116689 ||| | | || || | | || || || || || | || || ||||| |||| Sbjct 594663 TAGTTTTGCGGCCTAAGCCGGCTTGTTCATATTTGGTATATAACGCTTCGAACTCATCAC 594604 Query 116690 CCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCT 116749 || | | || | || || | || ||| || || | || | ||| | ||| Sbjct 594603 CCCAAACATCATACAGTCCGCGGCACTCATCAGGGCACATTAGGGTCCAGTCGCCATTTG 594544 Query 116750 CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGC 116809 | || || |||||||| || || || || ||||| || || |||| || || || | Sbjct 594543 CTTCGACACGCTTCATAAACAGATCCGGAATCCACAGTGCATAGAATAGGTCACGTGCAC 594484 Query 116810 GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCC 116869 | ||| || || ||||| ||||| |||| || ||||||||||| ||||||| Sbjct 594483 GGCTTTCCTCGGATCCATGATTTTTCCGCAAGTCCAGGAAATCCATGATATCAGCGTGCC 594424 Query 116870 ACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACC 116926 | ||||||| ||| | || | |||||||||||| | |||| |||||| |||||||| Sbjct 594423 ATGGTTCCATGTATATGGCAAATGACCCCTTGCGCTTGCCACCACCCTGGTCTACATACC 594364 Query 116927 TCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCC 116986 | || ||||| || |||| || | |||||| | ||||||| | ||||| || | Sbjct 594363 TTGCAGTTGCATTGAATATACGCAACATTGGCACAATACCATTGCTCTTCCCATTGGTGC 594304 Query 116987 CCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCC 117046 | || || | | |||| || | | ||| | | || ||||| || || | Sbjct 594303 CACGGATGTACGCCCCACTGGCCCTTATTTTGTGACAGGCAAGGCCTATACCGCCAGCAC 594244 Query 117047 ACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCT 117106 |||| ||| |||||||| ||| | | | |||| ||| | | |||||| | | Sbjct 594243 ACTTGCTGATGAATGCGCACTGCGTCAATGTCTCAAAGATACCAGCTAATGAGTCATCTT 594184 Query 117107 TATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGG 117166 | | | | | ||| || |||||||||||||||||| | ||||| | | || | | Sbjct 594183 TCATATCCAACAAGAAACAACTCGACATTTGTGGCCTTTGGGTACCGGAGAAAAACAACG 594124 Query 117167 TTGGTGTCGCGTGGATGAACATAC 117190 | || || || ||| |||| |||| Sbjct 594123 TCGGCGTAGCATGGGTGAA-ATAC 594101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613503258216240