Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq232 93.3 5e-14 seq190 86.0 7e-12 >seq232 Length=639093 Score = 93.3 bits (102), Expect = 5e-14 Identities = 330/501 (66%), Gaps = 20/501 (4%) Strand=Plus/Minus Query 48102 TGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGA 48161 ||||| ||||| ||||||||| || || ||||| || | |||| || | || | Sbjct 594640 TGTTCATATTTGGTATATAACGCTTCGAACTCATCACCCCAAACATCATACAGTCCGCGG 594581 Query 48162 CATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATA 48221 || |||| ||| ||||| | | ||| || ||| || || | ||||||| | | Sbjct 594580 CACTCATCAGGGCACATTAGGGTCCAGTCGCCATTTGCTTCGACACGCTTCATAAACAGA 594521 Query 48222 TCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATT 48280 || || ||||| || || ||| |||| || | | | ||| || ||| ||| Sbjct 594520 TCCGGAATCCACAGTGC-ATAGAATAGGTCACGTGCACGGCTTTCCTCGGATCCATGATT 594462 Query 48281 CCTTTT---AAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGC 48337 ||| |||| || |||| ||||| |||||||| ||||||||||| | ||||| || Sbjct 594461 --TTTCCGCAAGTCCAGGAAA-TCCATGATATCAGCGTGCCATGGTTCCATGTATATGGC 594405 Query 48338 -CATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGT---ATTGTTAT 48393 || || ||| | || || ||| || || |||| ||| || ||||| |||| || Sbjct 594404 AAATGACCCCTTG-CGCTTGCCACCACCCTGGTCTACATACCTTGCAGTTGCATTG-AAT 594347 Query 48394 AAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTC 48453 | || | |||||||| ||||||||||| | |||||||| || || || | Sbjct 594346 ATACGC--AACATTGGCACAATACCATTGCTCTTCCCATTGGTGCCACGGATGTACGCCC 594289 Query 48454 CACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGC-CATTTTAGAT-ATTAG 48511 |||| || ||||| || | | || |||||||| || || || || | | || | Sbjct 594288 CACTGGCCCTTATTTTGTGACAGGCAAGGCCTATACCGCCAGCACACTT--GCTGATGAA 594231 Query 48512 AGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAG 48571 || ||| | | | || ||| | || || ||| |||||| |||||| || | Sbjct 594230 TGCGCACTGCGTCAATGTCTCAAAGATACCAGCTAATGAGTCATCTTTCATATCCAACAA 594171 Query 48572 AAAACAACTAGACATTTGCGG 48592 |||||||| |||||||| || Sbjct 594170 GAAACAACTCGACATTTGTGG 594150 >seq190 Length=1127857 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 19372 CTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA 19431 || ||||| || ||||||| ||| |||||| |||||||||||||| || |||| | | Sbjct 498670 CTCGCTGCGAAGAATGCTAGAACAGTTTTAATGAAATGTTTTTCATCCGATGTTAGTTTT 498611 Query 19432 TTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCT 19491 | ||| || || ||||| || ||||| | |||||| | ||||| || || |||| Sbjct 498610 TCCCAGTCCTTCATATCACCTGAGAAATCGATTTCTTCTGCGGTCCAGAAGGATGCCTGG 498551 Query 19492 GCTTTTTTATACATGTTCCATATATCACGATA 19523 || || || ||| | |||||| || |||| Sbjct 498550 GCCTTCTTGTACCACTCCCATATTTCCGGATA 498519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562105188450960