Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq277 399 3e-106 seq190 167 3e-36 seq232 149 8e-31 seq395 134 2e-26 seq2 93.3 6e-14 >seq277 Length=1084746 Score = 399 bits (442), Expect = 3e-106 Identities = 1062/1596 (67%), Gaps = 31/1596 (2%) Strand=Plus/Minus Query 195298 AGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG 195357 || |||||||||||| || || || || ||||| ||||| ||||||| | | | Sbjct 24176 AGTTATTGGTATCGACTTGGGTACCACCTACTCCTGTGTGGGTGTATACAAGGACAACAA 24117 Query 195358 TGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTAC 195417 |||||| |||||||| || || || || ||| | || || || || ||||| ||||| || Sbjct 24116 TGTAGAAATTATCCCTAACGATCAGGGTAACAGGACCACCCCTTCCTACGTCGCCTTCAC 24057 Query 195418 AGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAA 195477 || | ||| |||||| |||| || ||||| || || ||| || ||||| || Sbjct 24056 TGACACTGAGCGTCTCATTGGTGACGCCGCTAAGAACCAGGAGGCCCGTAACCCAGAGAA 23997 Query 195478 TACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGA 195537 |||||||| ||||| ||| | ||||| || | | ||| || | ||||| || Sbjct 23996 CACTGTCTTCGACGCCAAGAGGCTTATCGGGAGGAGGTTCGACGACCCCACCGTCCAGGA 23937 Query 195538 CGATATAAAGGACTGGTCTTATGAAGTTGTTCC-CGGTGTGGCTGATAAGCCTATGATTA 195596 || || ||| ||||| | | | ||| | || |||||| | | ||||| | || Sbjct 23936 TGACATGAAGCACTGGCCAT-TCAAGGTCATCAACGGTGTTGGCGGCAAGCCCACCATCG 23878 Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656 | || || || || ||||||| || ||||| |||||||| || ||||| Sbjct 23877 AAGTAACCTTCCAGGGACAGAAGAAGACCTTCCACCCCGAGGAAATTTCATCCATGGTCC 23818 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | || ||||||||||| | ||| ||| | | | || || || || || ||||| || Sbjct 23817 TTATCAAGATGAAGGAAATTGCTGAACTCTACCTTGGCAAGACCGTCAAGGATGCCGTCA 23758 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | || || || || || |||| ||| || || || ||||| || ||||| || | | | | Sbjct 23757 TTACCGTCCCCGCCTATTTCAATGACTCTCAGCGTCAGGCCACCAAGGATGCCGGTACCA 23698 Query 195777 TTGCGGGTCTAAACTGTC-TTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 |||| || || ||| ||| | | || || |||||||| || || || || ||||| || Sbjct 23697 TTGCTGGACTCAAC-GTCATGCGTATCATTAATGAACCCACCGCCGCCGCTATTGCCTAC 23639 Query 195836 GGTCTGGACAAGAACAAGGA-CGA-AGATAAAAATGTATTGATCTTTGATCTCGGTGGTG 195893 ||||| ||||||| | ||| | | || || || || | ||||| |||||||| |||| Sbjct 23638 GGTCTCGACAAGA--AGGGATCTACCGAGAAGAACGTCCTTATCTTCGATCTCGGAGGTG 23581 Query 195894 GTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTG 195953 |||| || ||||| || | || | || |||| ||||| |||||||| ||||| || | Sbjct 23580 GTACTTTCGATGTATCCATCCTTACCATCGAAGACGGTATCTTCGAAGTCAAGGCAACCG 23521 Query 195954 CTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTC--TCCGTCATTTGTC 196011 |||||||||| || || |||||||| || ||||| || || || | | | |||| Sbjct 23520 CTGGTGATACCCACCTCGGTGGTGAGGACTTCGA-CAACCTCCTCGTTGAGCACTGTGTC 23462 Query 196012 TGATGAGTTCCGTCGAAAGAATAA--GAAAG-ATATTTCTGGAAATCCTAGGGCTCTTCG 196068 | ||| ||| | | ||| || ||||| | ||| | || | ||||| || Sbjct 23461 CG-TGACTTCATGAGGATGAACAATGGAAAGAACATTGCCACCAACAAGCGTGCTCTCCG 23403 Query 196069 TCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAAT 196128 |||||| ||||| ||||||||||| || || ||||| | | ||| | | Sbjct 23402 TCGGCTGAGGACCCACTGTGAACGTGCGAAGCGTGTACTCTCAAGCTCAACCCAAGCCAC 23343 Query 196129 GGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACG 196188 | ||| | || || | || || || || || | | || || || | |||||| || Sbjct 23342 CATCGAGCTCGACTCCCTCTTCGAAGGTATCGATTATAACACCACCATCAGCCGTGCTCG 23283 Query 196189 TTTTGAAGAGTTAAACTCTGATTTGTTTA--GGAAGTGT-ATGGAACCTGTTGAACAAGT 196245 ||| || ||| | ||| ||| | |||| | | || ||||| ||| ||| Sbjct 23282 TTTCGAGGAGATGTGTGGTGAGAAGTTCAGGGGAACTCTCAT---CCCTGTCGAA-AAGG 23227 Query 196246 ACTTCGTGACGCAAAG--ATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGA 196303 | | | | || | | || ||| || | | || | || ||||| || || Sbjct 23226 CTCTGGAGTC-CAGTGGCCTAGACAAGAGGAAAATCCACGAGGTCGTTCTTGTCGGTGGT 23168 Query 196304 TCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAG--CTTCTTCAATAATAAAGATT 196361 || |||||||| || ||||| |||||| | || || ||||||||| || || Sbjct 23167 TCCACCCGTATCCCCAAGATCCAACAGCT--CATCAAGGACTTCTTCAACGGAAAGGAAC 23110 Query 196362 TAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTA 196421 | | |||||||||| |||||||| || || || ||||| || || |||||||| | Sbjct 23109 CCAGCCGCTCGATCAACCCCGATGAAGCTGTCGCCTACGGTGCCGCTGTCCAGGCTGCCA 23050 Query 196422 TTCTCTCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCG 196481 | || || |||| | | ||| ||||||| || ||| | || |||||||| ||| Sbjct 23049 TCCTTTCCGGTGACCAGTCTGGTAAGATCCAAGAACTCCTGTTGCTCGATGTTGCTCCCC 22990 Query 196482 TATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAA 196541 | || || ||||| ||||| || || ||||| |||||| ||||| | | || || | Sbjct 22989 TTTCGCTCGGTCTCGAAACCGCCGGAGGTGTCATGACTGTGCTTATTAAGCGTAATACCA 22930 Query 196542 CTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTC 196601 | || || || |||||| || || || | || | || | || ||||| Sbjct 22929 CCATCCCTACCAAGAAGACTCAGGTATTCACCACCAACGAGGACAGGCAGGAGGGTGTGT 22870 Query 196602 ATATTCAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACT 196660 || || || | || || || || | || || | ||||| ||| |||| || |||| Sbjct 22869 TCATCCAGGTCTTCGAGGGTGAGCG-TGCCATGACCAAGGACAACAATCTCCTCGGAAAG 22811 Query 196661 TTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTC 196720 ||| | | || || ||| | | |||||||| || ||||| ||||| | || |||| Sbjct 22810 TTCCACCTTACTGGAATTGCCCCAGCACCCAGGGGAGTTCCCCAGATCGAGGTCACCTTC 22751 Query 196721 GATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCT 196780 ||||| ||||| || || ||||| ||||| || || ||||||| | | || || ||| Sbjct 22750 GATATCGACGCCAACGGTATTCTCAACGTTACTGCCATGGACAAGTCCACCGGAAAGTCT 22691 Query 196781 GAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATG 196840 || | || || ||||| |||||||| || || | | || ||||| |||||| Sbjct 22690 GAGCACGTTACCATCACCAACGACAAGGGACGTCTCAGCACTGCCGACATTGAGCGTATG 22631 Query 196841 GTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAG 196876 ||| ||| || || |||| || |||||| || ||| Sbjct 22630 GTTGCAGAGGCTGAGAAGTTCAAGGAAGAGGATGAG 22595 >seq190 Length=1127857 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || || | || || ||||| || || | ||||| ||| | Sbjct 281165 ATGCAAATATTCGTAAAGACTTTGACCGGCAAAACCATTACTTTGGAGGTCGAGCCCAGT 281224 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| ||||||||||| |||||||| || ||||| || || ||| Sbjct 281225 GACACTATCGAAAACGTCAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 281284 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || |||||||| || || |||||||||||||| || ||||| |||| ||||| Sbjct 281285 CAGCGTCTGATTTTTGCGGGCAAGCAGCTTGAAGATGGTCGCACCCTTTCTGACTACAAT 281344 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 ||||||||||| ||||| ||||| || || | || ||||||| Sbjct 281345 ATTCAAAAGGAGAGCACTCTTCACCTAGTGCTTCGTCTCAGGGGTGG 281391 Score = 152 bits (168), Expect = 7e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || || | || || ||||| || || | ||||| ||| | Sbjct 280526 ATGCAAATATTCGTAAAGACTTTGACCGGCAAAACCATTACTTTGGAGGTCGAGCCCAGT 280585 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| ||||||||||| |||||||| || ||||| || || ||| Sbjct 280586 GACACTATCGAAAACGTCAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 280645 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || |||||||| || || |||||||||||||| || ||||| |||| ||||| Sbjct 280646 CAGCGTCTGATTTTTGCGGGCAAGCAGCTTGAAGATGGCCGCACCCTTTCTGACTACAAT 280705 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | ||||||||| || || ||||| || || Sbjct 280706 ATCCAAAAGGAGAGCACACTTCACCTAGTGCT 280737 Score = 145 bits (160), Expect = 1e-29 Identities = 143/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 171889 GGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAG 171948 || || || || ||| | ||||| ||| | ||||| ||||| ||| |||| |||||| Sbjct 626508 GGTAAGACCATTACCTTGGAGGTCGAGCCCAGTGACACTATCGAAAACGTCAAGGCCAAG 626567 Query 171949 ATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAG 172008 ||||| |||||||| || ||||| || || ||||| || || |||||||| || || ||| Sbjct 626568 ATTCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGCGTCTGATTTTTGCGGGCAAGCAG 626627 Query 172009 CTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTT 172068 ||||||||||| ||||| || | || |||||| | ||||||||| ||||| ||||| Sbjct 626628 CTTGAAGATGGCCGTACTCTTTCGGACTACAACATCCAAAAGGAGAGCACTCTTCACCTA 626687 Query 172069 GTTCT 172073 || || Sbjct 626688 GTGCT 626692 >seq232 Length=639093 Score = 149 bits (164), Expect = 8e-31 Identities = 323/480 (67%), Gaps = 5/480 (1%) Strand=Plus/Plus Query 78261 ATGGAATTATTCCTATGCTTAGGGTATTCAATGCTACAGCACGCTATGTCAACCAAGCGG 78320 |||| ||| | || ||| | | |||||||||| || ||| | ||||| |||| | | Sbjct 594322 ATGGTATTGTGCCAATGTTGCGTATATTCAATGCAACTGCAAGGTATGTAGACCAGGGTG 594381 Query 78321 GTCGTAGG---AAGGGGTCATTCGCTATGTACCTTGAACCTTGGCACGCCGATGTAATGG 78377 || | | | ||||||||||| || || ||| | ||||| |||||||| ||| | |||| Sbjct 594382 GTGGCAAGCGCAAGGGGTCATTTGCCATATACATGGAACCATGGCACGCTGATATCATGG 594441 Query 78378 ATTTTTTGGAACTTCGTCTCAACCAGGGTGACGAGGAAGCTCGATGCA-GGGATTTATTC 78436 |||| |||| | || || || || ||||||| || |||| | || ||||| Sbjct 594442 ATTTCCTGGACTTGCGGAAAAATCATGGATCCGAGGAAAGCCG-TGCACGTGACCTATTC 594500 Query 78437 ACTGCTATGTGGATTCCGGATCTTTTTATGAAGAGAGTTGAGGAAGGAGGTAAATGGTCT 78496 ||| |||||||||||||||| ||||||||| | || || | | || | ||| | Sbjct 594501 TATGCACTGTGGATTCCGGATCTGTTTATGAAGCGTGTCGAAGCAAATGGCGACTGGACC 594560 Query 78497 CTTTTCTGTCCAGATAAGACTAAGGGTCTTTCAGATGTATACGGGGAAGAATTCGAAAAA 78556 || | || || ||| || || || | ||||| | || || || |||||| Sbjct 594561 CTAATGTGCCCTGATGAGTGCCGCGGACTGTATGATGTTTGGGGTGATGAGTTCGAAGCG 594620 Query 78557 TTGTACACTAAATACGAAGAGGAAGGTCTCGCTATTAAGACAATTGATGCATCTGAACTA 78616 || || || ||||| ||| | | || | | || || ||| ||| ||| Sbjct 594621 TTATATACCAAATATGAACAAGCCGGCTTAGGCCGCAAAACTATTCCTGCCCAAACACTT 594680 Query 78617 TGGAAAGCTATTATCAAAAGTCAAACAGAGACCGGCACCCCGTATATGCTATACAAAGAC 78676 ||| |||||| || ||||||||| || ||||| | ||| | |||||| ||||| || Sbjct 594681 TGGTTTGCTATTCTCCAAAGTCAAATCGAAACCGGTAACCCTTTTATGCTTTACAAGGAT 594740 Query 78677 AGCTGTAACAGAAAGTCTAACCAAAAGAACCTAGGTGTCATCAAAAGCTCTAACCTTTGC 78736 || || ||||||||||||| ||||||| || |||||| |||||||| ||| Sbjct 594741 GCATGCAATGCAAAGTCTAACCAACAGAACCTGGGAACCATCAAGTCATCTAACCTGTGC 594800 >seq395 Length=1074093 Score = 134 bits (148), Expect = 2e-26 Identities = 238/341 (70%), Gaps = 12/341 (4%) Strand=Plus/Minus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 || ||||||||||| || || | | | || | || |||||| | || ||| | || Sbjct 23452 AAAATGAAGGAGACGGCAGAGGCCCACCTAGGCAGAAATGTGAACAAGGCGGTTATCACG 23393 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 ||||| || |||||||| || || ||| |||||||||| ||||| |||| ||||| Sbjct 23392 GTACCCGCATACTTCAGCGACTCGCAAAGACAGGCGACGAAGGATGCTGGCAAAATTGCA 23333 Query 195782 GGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840 || ||| | ||| || ||||| || || ||||| || |||||||| | || | || || Sbjct 23332 GGCCTAGA-TGTCCTCAGAATCATTAACGAACCCACCGCGGCTGCCCTGGCCTTCGGCCT 23274 Query 195841 GGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 || |||||| | | | |||| || || ||| |||||| ||||| || || || Sbjct 23273 AGAGAAGAACGACGGC-AAGACAA-----TAGCCGTCTATGATCTGGGTGGCGGAACCTT 23220 Query 195901 TGATGTCTCACTTCT--CAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGT 195958 |||| |||| |||| ||| ||| ||||| | ||||| || || || || ||| Sbjct 23219 TGATATCTCGATTCTGGAAATCTTG--GGTGGAGTTTTCGAGGTGAAAGCCACAAACGGT 23162 Query 195959 GATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCT 195999 | || ||| |||||||| |||||||| |||| |||| Sbjct 23161 AACACATCTCTGGGTGGTGAGGATTTCGACCAACGTATTCT 23121 >seq2 Length=2195431 Score = 93.3 bits (102), Expect = 6e-14 Identities = 306/470 (65%), Gaps = 13/470 (3%) Strand=Plus/Minus Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432 || ||||| ||||| || || || || ||||| || | |||| | | | || || ||| Sbjct 1700908 ATTAACCCCGATGAGGCTGTCGCCTACGGTGCTGCTATGCAGGGAGGTGTGCTATCTGGT 1700849 Query 196433 GTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGT-TGCACCCGTATCCCTGGG 196491 | ||| | || | ||| | ||| | || ||||| ||| | | | || || || Sbjct 1700848 G-----AATCAACAC----ACGATGTGCTGTTGCTAGATGTCTGCCCAC-TGTCGCTCGG 1700799 Query 196492 TCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGAC 196551 | | ||||| | ||| ||||||||| | ||||| || | ||| || | | || | Sbjct 1700798 TATCGAAACGGTGGGAGGTGTTATGTCGGTTATTATCGAACGTAACTCACTTTTGCCCGC 1700739 Query 196552 TAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGT 196611 | ||| |||| ||||||| || | | || || || | || || || || Sbjct 1700738 GCACAAGTCACAAATCTTTTCGACCTCAACGGACAACCAGTCCACCGTCACCATCCAGGT 1700679 Query 196612 ATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGAC 196671 || ||||| | ||| || | ||||| ||| | || || | ||||| | || Sbjct 1700678 CTACCAAGGACAGCGCACCATGACCAAGGACAACACCCACCTGGGCAAATTCGACCTCAC 1700619 Query 196672 GGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGC 196731 ||| || || || || ||||||||||| || || | ||| |||||| | ||| | Sbjct 1700618 GGGTATCCCGTTGGCCCCAAGAGGTGTTCCTCAAATCGAAGTTACATTCGATGTGGACAC 1700559 Query 196732 AAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGA-AAAGATTG 196790 ||||| || || | ||| |||||||||| |||| ||| ||| || ||| || | Sbjct 1700558 TAATGGTATCCTCAGTGTCTCAGCTGAGGAAAAGGGAAGTGG-AAAGAAGAGAAATATCG 1700500 Query 196791 TGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATG 196840 | ||||| ||||||||| || || || ||| ||||| ||||||||| Sbjct 1700499 TCATTACTCCTGACAAGGGACGCCTCTCGCCGGAAGAAATCGAACGTATG 1700450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657858173234080