Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq395 120 9e-22 seq1 84.2 6e-11 >seq395 Length=1074093 Score = 120 bits (132), Expect = 9e-22 Identities = 218/314 (69%), Gaps = 4/314 (1%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| ||||| |||||| ||| || ||||||||||||| ||| || || ||| || || Sbjct 766832 CATGATGTCCTCCATAGCCTTCATCAAACGACGCTGAACATAGCCCGTCTCAGAAGTCTT 766773 Query 302625 TACAG-CTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCG 302683 |||| | ||||| || | ||| |||| ||||||||||| ||||| || | || | | Sbjct 766772 -ACAGGCAGTATCGATAATACCTTCACGTCCACCCATAGCGTGGAAAAACATTTCCTGAG 766714 Query 302684 GTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGA 302743 || || || | | | ||| | |||||||||||| ||| ||| || ||| Sbjct 766713 GTGTAAGGCCGGATAAATACGAGTTGGAAACGAAACCACGACTCTCAGGCCCATAGTCAT 766654 Query 302744 ACTTGGTAAAGTGTGGCAGGGTCCTGTTCTC-ATAGCCGTATGGGATACGCTTTCCATCA 302802 |||| ||||||||||||| | | | || | | |||| |||| | |||||| || || Sbjct 766653 GCTTGATAAAGTGTGGCAGTGATC-GATCACGAAAGCCAAATGGCACACGCTTACCTTCC 766595 Query 302803 ACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAG 302862 || || || || |||| || | || ||||||||||| || | | |||||||| Sbjct 766594 ACATTTTGTTGACCCACACATGCGATAATCTGCGAAATGTTAATTGTAGACCCCTTGGAT 766535 Query 302863 CCAGCATTTACCAT 302876 ||| || ||||| Sbjct 766534 CCACTGTTAACCAT 766521 >seq1 Length=1420996 Score = 84.2 bits (92), Expect = 6e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 252531 ATCCATCCTATTATCATAATTTGTAACATACATACCAAGCGCCTGCTTTCCCATAGCACT 252590 |||||||||| | | || || |||||| ||| | ||||| ||||||||||| || Sbjct 574070 ATCCATCCTAAGGTTGAAGTTGGTCGCATACACACCCATGGCCTGTTTTCCCATAGCGCT 574129 Query 252591 CTGGTAAGTATTTCTGGGAGACTGATTGTTTTCCGGGAAAGGAATGCATGATGCTACA-A 252649 ||||| ||||| || ||||| || || | || ||||| |||||| ||| || ||| | Sbjct 574130 TTGGTATGTATTCCTTGGAGATTGGTTTTGGTCTGGGAATGGAATGATTGAGGC-ACAGA 574188 Query 252650 CACCGAAGATAGTGCTTGGGTGAATTTCACAGTGACTGTA 252689 | || | ||| || ||||| |||||||| || |||| Sbjct 574189 CTCCCAGGATCATGGAAGGGTGGATTTCACAATGGGTGTA 574228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471807907161218