Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq190 116 3e-21 >seq190 Length=1127857 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||| ||||| | ||||| ||| || |||||||| || || || | | Sbjct 281391 CCACCCCTGAGACGAAGCACTAGGTGAAGAGTGCTCTCCTTTTGAATATTGTAGTCAGAA 281332 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| || || || ||||| ||| | |||| | ||||| || || ||| Sbjct 281331 AGGGTGCGACCATCTTCAAGCTGCTTGCCCGCAAAAATCAGACGCTGCTGGTCTGGGGGA 281272 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| || || || ||| || | ||||| |||| | ||||||| | || || Sbjct 281271 ATACCCTCCTTATCCTG-AATCTTGGCCTTGACGTTTTCGATAGTGTCACTGGGCTCGAC 281213 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || |||||||| || || || || || ||||| ||||| Sbjct 281212 CTCCAAAGTAATGGTTTTGCCGGTCAAAGTCTTTACGAATATTTGCAT 281165 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | ||| ||||| | ||||| ||| || ||||| || || || || | | Sbjct 280752 CCTCCCCTGAGACGAAGCACTAGGTGAAGTGTGCTCTCCTTTTGGATATTGTAGTCAGAA 280693 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||| ||| | |||| | ||||| || || ||| Sbjct 280692 AGGGTGCGGCCATCTTCAAGCTGCTTGCCCGCAAAAATCAGACGCTGCTGGTCTGGGGGA 280633 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| || || || ||| || | ||||| |||| | ||||||| | || || Sbjct 280632 ATACCCTCCTTATCCTG-AATCTTGGCCTTGACGTTTTCGATAGTGTCACTGGGCTCGAC 280574 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || |||||||| || || || || || ||||| ||||| Sbjct 280573 CTCCAAAGTAATGGTTTTGCCGGTCAAAGTCTTTACGAATATTTGCAT 280526 Score = 82.4 bits (90), Expect = 6e-11 Identities = 121/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||| ||||| | ||||| ||| || ||||| ||||| || |||| | Sbjct 626707 CCCCCCCTGAGACGAAGCACTAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCCGAA 626648 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || || || ||||| ||| | |||| | ||||| || || ||| Sbjct 626647 AGAGTACGGCCATCTTCAAGCTGCTTGCCCGCAAAAATCAGACGCTGCTGGTCTGGGGGA 626588 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCA 29727 |||||||| || || || ||| || | ||||| |||| | ||||||| Sbjct 626587 ATACCCTCCTTATCCTG-AATCTTGGCCTTGACGTTTTCGATAGTGTCA 626540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385216786842474