Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq190 116 3e-21 >seq190 Length=1127857 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||||||||||||| ||||| || | | ||| || | || || |||||||| ||| Sbjct 281361 GTGCTCTCCTTTTGAATATTGTAGTCAGAAAGGGTGCGACCATCTTCAAGCTGCTTGCCC 281302 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 ||||| |||| ||||||||||| | |||| | |||||| ||| ||||| ||| Sbjct 281301 GCAAAAATCAGACGCTGCTGGTCTGGGGGAATACCCTCCTTATCCTGAATCTTGGCCTTG 281242 Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 | || | | ||||| || | || ||||||| || || ||||| || |||||||| Sbjct 281241 ACGTTTTCGATAGTGTCACTGGGCTCGACCTCCAAAGTAATGGTTTTGCCGGTCAAAGTC 281182 Query 35720 TTCACAAATATCTGCAT 35736 || || ||||| ||||| Sbjct 281181 TTTACGAATATTTGCAT 281165 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || ||||||||||| || ||||| || | | ||| || | || || |||||||| ||| Sbjct 280722 GTGCTCTCCTTTTGGATATTGTAGTCAGAAAGGGTGCGGCCATCTTCAAGCTGCTTGCCC 280663 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 ||||| |||| ||||||||||| | |||| | |||||| ||| ||||| ||| Sbjct 280662 GCAAAAATCAGACGCTGCTGGTCTGGGGGAATACCCTCCTTATCCTGAATCTTGGCCTTG 280603 Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 | || | | ||||| || | || ||||||| || || ||||| || |||||||| Sbjct 280602 ACGTTTTCGATAGTGTCACTGGGCTCGACCTCCAAAGTAATGGTTTTGCCGGTCAAAGTC 280543 Query 35720 TTCACAAATATCTGCAT 35736 || || ||||| ||||| Sbjct 280542 TTTACGAATATTTGCAT 280526 Score = 86.0 bits (94), Expect = 6e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || ||||||||||| |||||||| || | | || || | || || |||||||| ||| Sbjct 626677 GTGCTCTCCTTTTGGATGTTGTAGTCCGAAAGAGTACGGCCATCTTCAAGCTGCTTGCCC 626618 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 ||||| |||| ||||||||||| | |||| | |||||| ||| ||||| ||| Sbjct 626617 GCAAAAATCAGACGCTGCTGGTCTGGGGGAATACCCTCCTTATCCTGAATCTTGGCCTTG 626558 Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACC 35709 | || | | ||||| || | || ||||||| || || || ||||| Sbjct 626557 ACGTTTTCGATAGTGTCACTGGGCTCGACCTCCAAGGTAATGGTCTTACC 626508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450790703651120