Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq232 147 3e-30 >seq232 Length=639093 Score = 147 bits (162), Expect = 3e-30 Identities = 617/958 (64%), Gaps = 22/958 (2%) Strand=Plus/Minus Query 69256 ACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA 69315 ||| |||| ||| || | || || || || || ||||| ||||| | | || Sbjct 594877 ACATACATCGGCAGCGCAATGGAAGCCAGGTTGCACACTGCCACCTCTTCTGGGGATGTG 594818 Query 69316 TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTA 69375 || |||| ||||| || || ||| | ||||| || ||||| || || || ||| Sbjct 594817 TACTGTACGATCTCACAGCACAGGTTAGATGACTTGATGGTTCCCAGGTTCTGTTGGTTA 594758 Query 69376 CTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 69435 |||| || || || ||||||||||| ||||| || |||| ||||| || ||| | Sbjct 594757 GACTTTGCATTGCATGCATCCTTGTAAAGCATAAAAGGGTTACCGGTTTCGATTTGACTT 594698 Query 69436 TCGATAATAGATTTCCAAAC------GACCCTAGCATTTATTACGGTCTTGTAACGCTTC 69489 | || ||||| ||||| | | | | || || ||| || | || Sbjct 594697 TGGAGAATAGCAAACCAAAGTGTTTGGGCAGGAATAGTT-TTGCGGCCT----AAGCCGG 594643 Query 69490 TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCA 69549 ||| |||||||| ||||||| | |||||| ||||| ||||||||||||| || ||| Sbjct 594642 -CTTGTTCATATTTGGTATATAACGCTTCGAACTCATCACCCCAAACATCATACAGTCCG 594584 Query 69550 GGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAAT 69609 | || |||| || ||||| | | ||| | ||| | | || || |||||||| Sbjct 594583 CGGCACTCATCAGGGCACATTAGGGTCCAGTCGCCATTTGCTTCGACACGCTTCATAAAC 594524 Query 69610 AGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 ||||| |||||||| || || ||| || || || | | | |||| || ||| Sbjct 594523 AGATCCGGAATCCACAGTGC-ATAGAATAGGTCACGTGCACGGCTTTCCTCGGATCCATG 594465 Query 69669 AttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 69728 |||||| | || || || ||||| ||||||| ||||||||||| | ||||| || Sbjct 594464 ATTTTTCCGCAAGTCCAGGAAATCCATGATATCAGCGTGCCATGGTTCCATGTATATGGC 594405 Query 69729 -CATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGA 69787 ||||| ||| || || || ||||| |||| || || ||||| ||| | | Sbjct 594404 AAATGAC-CCCTTGCGCTTGCCACCACCCTGGTCTACATACCTTGCAGTTGCATTGAATA 594346 Query 69788 CTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTC 69847 | || ||| || | ||||||||| || ||||| || ||| || || || | Sbjct 594345 TACGCAACATTGGCACAATACCATTGCTCTTCCCATTGGTGCCACGGATGTACGCCCCAC 594286 Query 69848 TTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 69907 | || | || || | | || ||||| || || || || ||| | || | Sbjct 594285 TGGCCCTTATTTTGTGACAGGCAAGGCCTATACCGCCAGCACACTTGCTGATGAATGCGC 594226 Query 69908 AACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGT-TAAGAAGAAAA 69966 | | ||||||| ||| | ||||| ||| |||||| |||| | || ||| ||| Sbjct 594225 ACTGCGTCAATGTCTCAAAGATACCAGCTAATGAGTCATCTTTCATATCCAACAAG-AAA 594167 Query 69967 CAGCTAGACATTTGATGATGTATAGTTCCCGCA-TTAAATAATGTAGGAGATGCGTGAGT 70025 || || |||||||| || | | | | ||| | ||| || || || | || || || Sbjct 594166 CAACTCGACATTTG-TGGCCTTTGGGTACCGGAGAAAAACAACGTCGGCGTAGCATGGGT 594108 Query 70026 GAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGAT 70084 ||| | || | | | ||| | ||||| | ||| | || || || |||| | | Sbjct 594107 GAAATACTTCTGACTCATCAGGTGATATGTCTGAATCGTACGCTCGATGTCTCCACAG-T 594049 Query 70085 GAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTA 70144 |||| ||| ||| || | ||| ||||| ||||| || || ||| | | || | |||| Sbjct 594048 GAATGCCTGCCGCAACTCTCATTAACATGTGCTGCGGGCGCTCTGCGATCTTGTCGTTTA 593989 Query 70145 TTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTC 70202 | | |||||||| || ||||| ||||| ||||| |||| |||| ||||| Sbjct 593988 TACGAAGAAGGTATGACCGCTCAAGAGTCTTAAAACCAAAGTAGTCGTATTGGAAGTC 593931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686904386610960