Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq232 114 1e-20 seq190 105 6e-18 >seq232 Length=639093 Score = 114 bits (126), Expect = 1e-20 Identities = 348/532 (65%), Gaps = 12/532 (2%) Strand=Plus/Minus Query 130409 TCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCTGTT 130468 || || ||||| | ||| |||| || || |||| || || ||||| || | || || Sbjct 595777 TCAACCGTGAACTTAATAGCATCAGTAGCAGGCTGAGTACGTAAATAGTAAACCCCGGTC 595718 Query 130469 TTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGGTAATTG--GGTT 130526 |||||||| | || |||||| ||| ||||| | ||||| | | || | Sbjct 595717 TTGAGTCCCTTCTTCCATCCATAGAAGTGCATGCTCGTGA--GTTTGCCGAAGGAAGGCT 595660 Query 130527 GCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCCA 130586 || ||| | |||||||||||||| || ||||||||||| ||| | ||||| |||| Sbjct 595659 GCTCCAGATAGATGTTGAGCGATTGGGACTGATCAATAAATATGCCACGATCTGCTGCCA 595600 Query 130587 TGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGTT 130646 | || | || ||||| | ||| || ||||| | |||||||| || ||| | ||||||| Sbjct 595599 TATCAATGATAGTTTTCTGTTTTATTTCCCACACTGTCTTGTACAGGTCCTTGATGTGTT 595540 Query 130647 TGGGTATGCGCGCAAT-CGATTGAACGCTACCGTTGTTGGCTATAA---TTTCGTTGCGC 130702 || || | | | || | | || | |||||| | ||| || | |||| || | Sbjct 595539 GAGGAATACCCTCGATGTGCCTCAA-GGAACCGTTATAGGCAATCAGCTTTTCCTT---C 595484 Query 130703 ATACTTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATT 130762 ||| || || | | || | | || || || || || || || | | Sbjct 595483 ATAGCTTCGTCCCAGAGCCCTAAATCCACGAGGTCCCGTAGCAGGTGGGGGTTTACCACA 595424 Query 130763 TGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGAT 130822 || || || || || || | |||||||||||| ||| | || || ||||| Sbjct 595423 AAGAACTCTCCGCTAAGCACACGGCGGTAGTAAATGTTGCTGGTGTATGGCTCGAAGGAC 595364 Query 130823 TCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAA 130882 |||||||| || | ||||| | ||| | |||||| |||||| |||| || | || Sbjct 595363 TCGTTGTTTCCCAGGATTTGGGATGTCGATGCGGTCGGCATGGGGGCCAGGAACAACGAG 595304 Query 130883 TTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATA 130934 ||||| ||||||||| | | || ||||| | || ||||| ||||||| Sbjct 595303 TTACGCAGACCGTGCTTGGCCATGCGGCGCTTAAGATCGTCCCAGTCCCATA 595252 Score = 84.2 bits (92), Expect = 2e-11 Identities = 247/374 (66%), Gaps = 9/374 (2%) Strand=Plus/Minus Query 131615 GGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACC 131674 || |||||||| | ||| |||| || ||| || ||||||||||||| |||||| | | Sbjct 594571 GGGCACATTAGGGTCCAGTCGCCATTTGCTTCGACACGCTTCATAAACAGATCCGGAATC 594512 Query 131675 CATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAttttt-ttCAA 131733 || | || || || || || | || | || || | | |||| |||||| ||| Sbjct 594511 CACAGTGCATAGAATAGGTCACGTGCACGGCTTTCCTC-GGATCCATGATTTTTCCGCAA 594453 Query 131734 ATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTT 131793 | | || |||| || || || ||||| ||||||| || | || | || || || Sbjct 594452 GTCCAGGAAATCCATGATATCAGCGTGCCATGGTTCCATGTATATGGCAAATGACCCCTT 594393 Query 131794 GCGCTT---ACCGCCTTGATTAACATGACGAACCATGTTG--TTGTATACGCGCAACATG 131848 |||||| ||| || || | |||| || || |||| ||| ||| |||||||| Sbjct 594392 GCGCTTGCCACCACCCTGGTCTACAT-ACCTTGCA-GTTGCATTGAATATACGCAACATT 594335 Query 131849 GGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATT 131908 ||| | | ||| ||| || |||||||||| ||||| ||| |||| || ||| Sbjct 594334 GGCACAATACCATTGCTCTTCCCATTGGTGCCACGGATGTACGCCCCACTGGCCCTTATT 594275 Query 131909 TTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGA 131968 |||||| | || || ||||| || | | || ||| | |||||| | || | Sbjct 594274 TTGTGACAGGCAAGGCCTATACCGCCAGCACACTTGCTGATGAATGCGCACTGCGTCAAT 594215 Query 131969 GTGTTATAGATACC 131982 || | | ||||||| Sbjct 594214 GTCTCAAAGATACC 594201 >seq190 Length=1127857 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || ||||||||||||||||| | | |||| | ||||| ||||| || || || || Sbjct 281355 TCCTTTTGAATATTGTAGTCAGAAAGGGTGCGACCATCTTCAAGCTGCTTGCCCGCAAAA 281296 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || |||||||| || || || || | |||||| ||||| |||||| || | | || Sbjct 281295 ATCAGACGCTGCTGGTCTGGGGGAATACCCTCCTTATCCTGAATCTTGGCCTTGACGTTT 281236 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | |||||| ||| || || || | ||| || | |||||| |||| ||| || || Sbjct 281235 TCGATAGTGTCACTGGGCTCGACCTCCAAAGTAATGGTTTTGCCGGTCAAAGTCTTTACG 281176 Query 27237 AAGATTTGCAT 27247 || |||||||| Sbjct 281175 AATATTTGCAT 281165 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || ||||| ||||||||||| | | |||| | ||||| ||||| || || || || Sbjct 280716 TCCTTTTGGATATTGTAGTCAGAAAGGGTGCGGCCATCTTCAAGCTGCTTGCCCGCAAAA 280657 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || |||||||| || || || || | |||||| ||||| |||||| || | | || Sbjct 280656 ATCAGACGCTGCTGGTCTGGGGGAATACCCTCCTTATCCTGAATCTTGGCCTTGACGTTT 280597 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | |||||| ||| || || || | ||| || | |||||| |||| ||| || || Sbjct 280596 TCGATAGTGTCACTGGGCTCGACCTCCAAAGTAATGGTTTTGCCGGTCAAAGTCTTTACG 280537 Query 27237 AAGATTTGCAT 27247 || |||||||| Sbjct 280536 AATATTTGCAT 280526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424931738051568