Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq232 221 1e-52 >seq232 Length=639093 Score = 221 bits (244), Expect = 1e-52 Identities = 1045/1647 (63%), Gaps = 35/1647 (2%) Strand=Plus/Minus Query 117843 TAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTG 117902 ||||| | ||| |||||||| |||| |||||| |||| | ||||| | | ||| Sbjct 595732 TAGTAAACCCCGGTCTTGAGTCCCTTCTTCCATCCATAGAAGTGCATGCTCGTGAGTTTG 595673 Query 117903 GAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCC 117962 || || || |||| ||| ||| | |||||| ||||| || || || Sbjct 595672 CCGAAGGAAGGCTGCTCCAGATAGATGTTGAGCGATTGGGACTGATCAATAAATATGCCA 595613 Query 117963 CGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGG 118022 ||||| || ||||||||||| | | ||| || ||||||||||| ||| |||| ||| Sbjct 595612 CGATCTGCTGCCATATCAATGATAGTTTTCTGTTTTATTTCCCACACTGTCTTGTACAGG 595553 Query 118023 TTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATG 118082 | ||| || | | || ||| || |||| | | ||| ||| | | | || Sbjct 595552 TCCTTGATGTGTTGAGGAATACCCTCGATGTGCCTCAAGGA---ACCGTTATAGGCAATC 595496 Query 118083 AGAT---CCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGC 118139 || | |||||||| | | |||||| || | | ||| ||| | || || Sbjct 595495 AGCTTTTCCTTCATAGCTTCGTCCCAGAGCCCTAAATCCACGAGGTCCCGTAGCAGGTGG 595436 Query 118140 TTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTAT 118199 || || |||| ||||| || || || | || || ||| | |||||| Sbjct 595435 GGGTTTACCACAAAGAACTCTCCGCTAAGCACACGGCGGTAGTAAATGTTGCTGGTGTAT 595376 Query 118200 GGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCC 118259 ||||| ||| |||| ||||| |||| |||||||| ||| || || || |||||||| ||| Sbjct 595375 GGCTCGAAGGACTCGTTGTTTCCCAGGATTTGGGATGTCGATGCGGTCGGCATGGGGGCC 595316 Query 118260 ATGAGAAGGCTGTTACGGAGACCCT--TTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGT 118317 | || | |||||| ||||| | || || ||||| ||| ||| ||||||||| Sbjct 595315 AGGAACAACGAGTTACGCAGACCGTGCTTGGCC--ATGCGGCGCTTAAGATCGTCCCAGT 595258 Query 118318 CGTAGTTGAGCTTTGTCTCCCCCT----GCCACATA--TCAAACTGGAGGATACCTTGGG 118371 | | | ||| | ||| | ||| || | || ||||| || | |||| | Sbjct 595257 CCCAT---AACTTGTTGTCCACAGTGGCGCCCCAAAGGTCGAACTGCAGCTTGCCTTTTG 595201 Query 118372 ACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCT-- 118429 | |||||||||||| | | |||||| | || ||| || ||||| || | Sbjct 595200 AGGCTGGCGATCCCGGGTACGACTCATACGTACCATCACGTTCGGCCAA--CGAAATAGA 595143 Query 118430 CGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTC 118489 | | || || ||| || || || || || || || || | | ||||||| || Sbjct 595142 CTCATCCAGACAACCGTAGTAAATCGTCTCGAATATACGGCGGTTAAGTTCCTTGGCTTC 595083 Query 118490 GTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 118549 || || || |||| | || || ||||| ||||| | ||| || || || | Sbjct 595082 CTCAGATTCGAACGGGTAGCGCATCAGCATAAAGGTGTCCGCCAAACCCTGCACTCCTAC 595023 Query 118550 GCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCT 118609 ||||| || | || | ||| ||| | || | ||| ||||| | || || Sbjct 595022 ACCAATAGGTCTGTGGCGATGATTGGACACCTTCGCCTCCGGCACAGGATAGTAGTTTCT 594963 Query 118610 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTA 118669 || || | | || || || | || | || | || ||| | | ||||| | | Sbjct 594962 GTCAATGATTTTGTTGAGGTTGTATGTAATGACACGGGAGACTTCGTACAACTTTTGGAA 594903 Query 118670 ATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACA 118729 || | |||| || || | || |||||| | || || || || || ||||| || || Sbjct 594902 GTCGTACGTGCGGGTTTCCTTGTTCACATACATCGGCAGCGCAATGGAAGCCAGGTTGCA 594843 Query 118730 CACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTT 118789 ||| | ||| || ||||||| || || || ||||| ||| || ||| Sbjct 594842 CACTGCCACCTCTTCTGGGGATGTGTACTGTACGATCTCACAGCACAGGTTAGATGACTT 594783 Query 118790 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTA 118849 ||||| |||| ||||| ||| || ||||||| || || ||||||||||||||||| | Sbjct 594782 GATGGTTCCCAGGTTCTGTTGGTTAGACTTTGCATTGCATGCATCCTTGTAAAGCATAAA 594723 Query 118850 TGGCGTCCCCGTCTCCGTTTGGGACTT--GAGAATAGCCTTCCAGACA--TCGGCAGCTG 118905 || | || || || |||| |||| ||||||||| ||| | | || || | Sbjct 594722 AGGGTTACCGGTTTCGATTTG--ACTTTGGAGAATAGCAAACCAAAGTGTTTGG--GCAG 594667 Query 118906 GCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTT 118965 | | ||| | | || || ||| || || || || || | ||||| ||||| | Sbjct 594666 GAATAGTTTTGCGGCCTAAGCCGGCTTGTTCATATTTGGTATATAACGCTTCGAACTCAT 594607 Query 118966 CACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCAC 119025 ||||| | || | || || | || ||| ||||| | || | ||| | ||| Sbjct 594606 CACCCCAAACATCATACAGTCCGCGGCACTCATCAGGGCACATTAGGGTCCAGTCGCCAT 594547 Query 119026 CCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGAC 119085 | || || |||||||| || || || || ||||| || || |||| || || || Sbjct 594546 TTGCTTCGACACGCTTCATAAACAGATCCGGAATCCACAGTGCATAGAATAGGTCACGTG 594487 Query 119086 AGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGT 119145 || ||| || || ||||| ||||| |||| || ||||||||||| |||| Sbjct 594486 CACGGCTTTCCTCGGATCCATGATTTTTCCGCAAGTCCAGGAAATCCATGATATCAGCGT 594427 Query 119146 GCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACAT 119202 |||| ||||||| ||| | || | ||||||||| || | |||| |||||| ||||| Sbjct 594426 GCCATGGTTCCATGTATATGGCAAATGACCCCTTGCGCTTGCCACCACCCTGGTCTACAT 594367 Query 119203 ACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTG 119262 |||| ||||| || || |||| ||| | |||||| | ||||||| | | ||||| | Sbjct 594366 ACCTTGCAGTTGCATTGAATATACGCAACATTGGCACAATACCATTGCTCTTCCCATTGG 594307 Query 119263 TCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTG 119322 | || || || | | | |||| || | | ||| | | || ||||| || | Sbjct 594306 TGCCACGGATGTACGCCCCACTGGCCCTTATTTTGTGACAGGCAAGGCCTATACCGCCAG 594247 Query 119323 CCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCAC 119382 | ||||| ||| ||||||| ||| | | | |||| ||| | | |||||| Sbjct 594246 CACACTTGCTGATGAATGCGCACTGCGTCAATGTCTCAAAGATACCAGCTAATGAGTCAT 594187 Query 119383 CCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGA 119442 | || | | | | ||| || ||||||||||| ||||| | ||||| | | || | Sbjct 594186 CTTTCATATCCAACAAGAAACAACTCGACATTTGTGGCCTTTGGGTACCGGAGAAAAACA 594127 Query 119443 GAGTTGGTGTCGCGTGGATGAACATAC 119469 || || || || ||| |||| |||| Sbjct 594126 ACGTCGGCGTAGCATGGGTGAA-ATAC 594101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618431226553840