Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq277 215 2e-50 seq190 125 2e-23 seq2 84.2 7e-11 >seq277 Length=1084746 Score = 215 bits (238), Expect = 2e-50 Identities = 939/1474 (64%), Gaps = 35/1474 (2%) Strand=Plus/Minus Query 349201 TATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGT 349260 ||| || ||||| || ||||| || || || ||||| | ||| | | | | ||| Sbjct 24173 TATTGGTATCGACTTGGGTACCACCTACTCCTGTGTGGGTGTATACAAGGACAACAATGT 24114 Query 349261 AGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGA 349320 |||||| || | || ||||| |||||||| || || || || ||||| || || || || Sbjct 24113 AGAAATTATCCCTAACGATCAGGGTAACAGGACCACCCCTTCCTACGTCGCCTTCACTGA 24054 Query 349321 AACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATAC 349380 ||||||||| | |||||||| | || || || || | || ||| ||| | || || Sbjct 24053 CACTGAGCGTCTCATTGGTGACGCCGCTAAGAACCAGGAGGCCCGTAACCCAGAGAACAC 23994 Query 349381 GGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACA---CAATC 349437 || || || || ||| | ||||| || || || || ||| | | || || Sbjct 23993 TGTCTTCGACGCCAAGAGGCTTATCGGGAGGAGGTTC---GACGACCCCACCGTCCAGGA 23937 Query 349438 TGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGAT------AAACCAAT 349491 ||| | || || | || || | || | ||| ||||| | || || | Sbjct 23936 TGACATGAAGCACTGGCCATTCAAGGTCAT--CAA----CGGTGTTGGCGGCAAGCCCAC 23883 Query 349492 TATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAA 349550 || || || | | ||| | || || | || |||| || ||||||||||| | Sbjct 23882 CATCGAAGTAACCT-TCCAGGGACAGAAGAAGACCTTCCACCCCGAGGAAATTTCATCCA 23824 Query 349551 TGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATG 349610 |||| | | || |||||||||||||||||| || | || | || || | |||| Sbjct 23823 TGGTCCTTATCAAGATGAAGGAAATTGCTGAACTCTACCTTGGCAAGACCGTCAAGGATG 23764 Query 349611 CTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTG 349670 | || ||||| || || |||||||| ||||| | |||||| || || || ||||| | Sbjct 23763 CCGTCATTACCGTCCCCGCCTATTTCAATGACTCTCAGCGTCAGGCCACCAAGGATGCCG 23704 Query 349671 GCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTG 349730 | | |||||| || | || || | | || |||||||||||||| || || || |||| Sbjct 23703 GTACCATTGCTGGACTCAACGTCATGCGTATCATTAATGAACCCACCGCCGCCGCTATTG 23644 Query 349731 CATATGGGCTTGATAAAATGAGTGACCAA--GaaaaaaaTATTCTTATTTTTGATTTAGG 349788 | || || || || || | || || | | || || || | ||||| || ||| | || Sbjct 23643 CCTACGGTCTCGACAAGA--AGGGATCTACCGAGAAGAACGTCCTTATCTTCGATCTCGG 23586 Query 349789 TGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGC 349848 ||||||||||| |||||||| | || || | ||||| || || || ||||| || || Sbjct 23585 AGGTGGTACTTTCGATGTATCCATCCTTACCATCGAAGACGGTATCTTCGAAGTCAAGGC 23526 Query 349849 AACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTT 349908 ||| ||||||||||| || || ||||| || || || || || | |||||| ||| | Sbjct 23525 AACCGCTGGTGATACCCACCTCGGTGGTGAGGACTTCGACAACCTCCTCGTTGAGCACTG 23466 Query 349909 TGTTAAAGAATT--TAAGCGTCAA-GCTAAAATTGATATTGGAGATAATCCTAGAGCAAT 349965 ||| || || | || | || | || | |||| || | || | Sbjct 23465 TGTCCGTGACTTCATGAGGATGAACAATGGAAAGAACATTGCCACCAACAAGCGTGCTCT 23406 Query 349966 GCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAAC 350025 ||||| || || || ||||||||||| |||||| | ||| | |||||| | Sbjct 23405 CCGTCGGCTGAGGACCCACTGTGAACGTGCGAAGCGTGTACTCTCAAGCTCAACCCAAGC 23346 Query 350026 CTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGC 350085 | | || || | || || || || || | |||| | | || | ||||| Sbjct 23345 CACCATCGAGCTCGACTCCCTCTTCGAAGGTATCGATTATAACACCACCATCAGCCGTGC 23286 Query 350086 TCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAG- 350144 ||| || || || | ||| || || || | ||| | ||||| ||||| | Sbjct 23285 TCGTTTCGAGGAGATGTGTGGTGAGAAGTTCAGGGGAACTCTCATCCCTGTCGAAAAGGC 23226 Query 350145 TATTAA---AAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTG 350201 | | | || || | | ||| | | || | || || ||| | || |||| Sbjct 23225 TCTGGAGTCCAGTGGCCTAGA----CAAGAGGAAAATCCACGAGGTCGTTCTTGTCGGTG 23170 Query 350202 GTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC 350261 |||| || ||||| || || | |||||| | | || || || || || || |||| Sbjct 23169 GTTCCACCCGTATCCCCAAGATCCAACAGCTCATCAAGGACTTCTTCAACGGAAAGGAAC 23110 Query 350262 CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTA 350321 | | || || || || ||||||||||| || || ||||| ||||| ||||| | | Sbjct 23109 CCAGCCGCTCGATCAACCCCGATGAAGCTGTCGCCTACGGTGCCGCTGTCCAGGCTGCCA 23050 Query 350322 TTTTATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCAC 350381 | | || || | || | ||| || | || || | | || ||||| |||| | Sbjct 23049 TCCTTTCCGGTGACCAGTCTGGTAAGATCCAAGAACTCCTGTTGCTCGATGTTGCTCCCC 22990 Query 350382 TTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTA 350441 ||||||| || | ||||| | || | || |||||||| |||||| | |||| | Sbjct 22989 TTTCGCTCGGTCTCGAAACCGCCGGAGGTGTCATGACTGTGCTTATTAAGCGTAATACCA 22930 Query 350442 CTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAA 350501 | | ||||| || ||| | || || | || | || | ||| | || Sbjct 22929 CCATCCCTACCAAGAAGACTCAGGTATTCACCACCAACGAGGACAGGCAGGAGGGTGTGT 22870 Query 350502 CAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAAT 350561 || || || || || ||||| ||||| || || || || ||| || ||| | | Sbjct 22869 TCATCCAGGTCTTCGAGGGTGAGCGTGCCATGACCAAGGACAACAATCTCCTCGGAAAGT 22810 Query 350562 TTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCG 350621 | ||| | || |||| | ||| || || |||||||| ||||| || ||| | |||| Sbjct 22809 TCCACCTTACTGGAATTGCCCCAGCACCCAGGGGAGTTCCCCAGATCGAGGTCACCTTCG 22750 Query 350622 ATATTGATTCAAATGGTATTTTAAATGTTACCGC 350655 |||| || | || |||||| | || ||||| || Sbjct 22749 ATATCGACGCCAACGGTATTCTCAACGTTACTGC 22716 Score = 87.8 bits (96), Expect = 5e-12 Identities = 78/94 (83%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 423765 AGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CCTC 423822 |||| ||||| ||||| |||| |||| | |||||| ||| |||| ||| ||| || |||| Sbjct 482156 AGCACGGATGGCCGAGCGGTCAAAGGCGCCAGACTCAAGTTCTGGTGGGCGAGAGTCCTC 482097 Query 423823 GTGGGTTCAAACCCCACTCCGTGC-ATTTATTAT 423855 ||||||||||| |||||| ||||| || |||||| Sbjct 482096 GTGGGTTCAAATCCCACTTCGTGCAATCTATTAT 482063 >seq190 Length=1127857 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || |||||||| ||| ||||||||||| || ||||| | || || |||||| Sbjct 281376 AGCACTAGGTGAAGAGTGCTCTCCTTTTGAATATTGTAGTCAGAAAGGGTGCGACCATCT 281317 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 ||||| || || || ||||| || ||||| ||||| || || ||||| || || |||||| Sbjct 281316 TCAAGCTGCTTGCCCGCAAAAATCAGACGCTGCTGGTCTGGGGGAATACCCTCCTTATCC 281257 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || || || || || || || | ||| || || || || | |||| || Sbjct 281256 TGAATCTTGGCCTTGACGTTTTCGATAGTGTCACTGGGCTCGACCTCCAAAGTAATGGTT 281197 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| | || ||||| || || ||||| Sbjct 281196 TTGCCGGTCAAAGTCTTTACGAATATTTGCAT 281165 Score = 116 bits (128), Expect = 1e-20 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || ||||| || ||| ||||| ||||| || ||||| | || || |||||| Sbjct 280737 AGCACTAGGTGAAGTGTGCTCTCCTTTTGGATATTGTAGTCAGAAAGGGTGCGGCCATCT 280678 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 ||||| || || || ||||| || ||||| ||||| || || ||||| || || |||||| Sbjct 280677 TCAAGCTGCTTGCCCGCAAAAATCAGACGCTGCTGGTCTGGGGGAATACCCTCCTTATCC 280618 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || || || || || || || | ||| || || || || | |||| || Sbjct 280617 TGAATCTTGGCCTTGACGTTTTCGATAGTGTCACTGGGCTCGACCTCCAAAGTAATGGTT 280558 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| | || ||||| || || ||||| Sbjct 280557 TTGCCGGTCAAAGTCTTTACGAATATTTGCAT 280526 Score = 100 bits (110), Expect = 9e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || |||||||| ||| ||||| || || || || || | || || |||||| Sbjct 626692 AGCACTAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCCGAAAGAGTACGGCCATCT 626633 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 ||||| || || || ||||| || ||||| ||||| || || ||||| || || |||||| Sbjct 626632 TCAAGCTGCTTGCCCGCAAAAATCAGACGCTGCTGGTCTGGGGGAATACCCTCCTTATCC 626573 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || || || || || || || | ||| || || || || | |||| ||| Sbjct 626572 TGAATCTTGGCCTTGACGTTTTCGATAGTGTCACTGGGCTCGACCTCCAAGGTAATGGTC 626513 Query 140706 TTTCC 140710 || || Sbjct 626512 TTACC 626508 >seq2 Length=2195431 Score = 84.2 bits (92), Expect = 7e-11 Identities = 73/87 (84%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 423763 AGAGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CC 423820 || ||| ||||| ||||||||| ||||| || ||||||||||| |||| || ||| || Sbjct 506583 AGCGCACGGATGTCCGAGTGGT-TAAGGAGGGGGACTTAAGATCCTCTGGTCGTAAGACC 506641 Query 423821 TCGTGGGTTCAAACCCCACTCCGTGCA 423847 ||||||||| |||||||||||||||| Sbjct 506642 GCGTGGGTTCGAACCCCACTCCGTGCA 506668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515244421102742