Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq232 147 2e-30 seq2 107 2e-18 >seq232 Length=639093 Score = 147 bits (162), Expect = 2e-30 Identities = 360/541 (67%), Gaps = 6/541 (1%) Strand=Plus/Plus Query 53244 AGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACG 53303 |||| || || | ||||| || ||||| || || || || ||||| || |||| | Sbjct 594076 AGACATATCACCTGATGAGTCAGAAGTATTTCACCCATGCTACGCCGACGTTGTTTTTCT 594135 Query 53304 CTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGA 53363 | ||||| | || || |||||||| || ||| || ||| ||||| |||||||| Sbjct 594136 CCGGTACCCAAAGGCCACAAATGTCGAGTTGTTTCTTGTTGGATATGAAAGATGACTCAT 594195 Query 53364 TCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTA 53423 | | || |||| ||||| | | | |||| || |||| |||||| | || |||| Sbjct 594196 TAGCTGGTATCTTTGAGACATTGACGCAGTGCGCATTCATCAGCAAGTGTGCTGGCGGTA 594255 Query 53424 TCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCG 53483 | || | ||| || | | || | || | ||| || || || || Sbjct 594256 TAGGCCTTGCCTGTCACAAAATAAGGGCCAGTGGGGCGTACATCCGTGGCACCAATGGGA 594315 Query 53484 TCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACC 53543 | |||| || ||||| ||| | || | ||||| || || |||| || ||| Sbjct 594316 AGAGCAATGGTATTGTGCCAATGTTGCGTATATTCAATGCAACTGCAAGGTATGTAGACC 594375 Query 53544 AGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACA 53603 |||||||||| |||||||||||||| || ||||| ||| | || || |||||||| || | Sbjct 594376 AGGGTGGTGGCAAGCGCAAGGGGTCATTTGCCATATACATGGAACCATGGCACGCTGATA 594435 Query 53604 TTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGAC 53662 | ||||| || || || |||| ||||| || ||| || | || ||| |||||| Sbjct 594436 TCATGGATTTCCTGGACTTGCGGAAAAATCATGGATCCGAGGA-AAGCCGTGCACGTGAC 594494 Query 53663 CTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAG--GACGAGG 53720 || || || |||||||||||||| || || ||| || ||| |||| | | | Sbjct 594495 CTATTCTATGCACTGTGGATTCCGGATCTGTTTATG--AAGCGTGTCGAAGCAAATGGCG 594552 Query 53721 AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGT 53780 | ||| ||| |||||||| | ||||||| ||| || | | ||| | ||||| |||| Sbjct 594553 ACTGGACCCTAATGTGCCCTGATGAGTGCCGCGGACTGTATGATGTTTGGGGTGATGAGT 594612 Query 53781 T 53781 | Sbjct 594613 T 594613 Score = 105 bits (116), Expect = 7e-18 Identities = 303/458 (66%), Gaps = 21/458 (5%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 || || || ||||| || || |||| || ||||| ||||| ||||| | || ||| || Sbjct 595293 GGTCTGCGTAACTCGTTGTTCCTGGCCCCCATGCCGACCGCATCGACATCCCAAATCCTG 595352 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG-GACCCTAGC 55596 || ||||||||| | |||||||| ||||| | |||||| ||| ||||| | | |||| Sbjct 595353 GGAAACAACGAGTCCTTCGAGCCATACACCAGCAACATTTACTACCGCCGTGTGCTTAGC 595412 Query 55597 AGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTG 55656 || ||||| | || | ||| ||||| | |||||| | | | || Sbjct 595413 -GGAGAGTTCTTTGTGGTAAACCCCCACCTGCTACGGGACCTCGTGGATTTAGGGCTCTG 595471 Query 55657 GAACCCGCAG--ATCAAG---ACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTG 55711 | || | || || ||| | | |||| ||||| ||| | | | | Sbjct 595472 GGAC--GAAGCTATGAAGGAAAAGCTGATTGCCTATAACGGT---TCCTTGAGGCACATC 595526 Query 55712 GAG---ATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAG 55768 ||| ||||||| | ||||||| | ||| ||| |||||||| || |||||| Sbjct 595527 GAGGGTATTCCTCAACACATCAAGGACCTGTACAAGACAGTGTGGGAAATAAAACAGAAA 595586 Query 55769 AGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAAC 55828 | | | ||||| ||| || |||||||| | || || |||||||| || || ||| Sbjct 595587 ACTATCATTGATATGGCAGCAGATCGTGGCATATTTATTGATCAGTCCCAATCGCTCAAC 595646 Query 55829 ATCTTCATGGAGAATCCTTCACTGGCCAAGTT---GAGCTCGATGCACTTTTACGGGTGG 55885 |||| ||||| | ||||| | | ||| | |||| |||||||| || || ||| Sbjct 595647 ATCTATCTGGAGCAGCCTTCCTTCGGCAAACTCACGAGC---ATGCACTTCTATGGATGG 595703 Query 55886 AAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 ||||||||||||||||| || | |||||| | || || Sbjct 595704 AAGAAGGGACTCAAGACCGGGGTTTACTATTTACGTAC 595741 >seq2 Length=2195431 Score = 107 bits (118), Expect = 2e-18 Identities = 196/281 (70%), Gaps = 7/281 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCC--GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT 152086 |||||||| || |||| ||| | |||||||| |||||| | || ||||||||| Sbjct 840471 GTGAAGATATAACGGG--CTGCCGATGCATCCTTTCCACCTTCTTTTCGGCTTCCAAACT 840528 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 ||||| |||| || || | |||| ||| || | |||||||| | ||| |||| ||| | Sbjct 840529 GTCCACAGGGTTCCAGTACATTGATGTTATTTGATCCCACGAAGTCCTGTGCCATATTGA 840588 Query 152147 CAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 ||||| ||| || ||| || ||||||||||| |||| ||||| || | ||| | Sbjct 840589 TGATCGTTTGCTGTAGTGACGCCTCCCCGTGGTGATAAGCCGAATGCTCTGCTACGTACC 840648 Query 152207 CCGCCAACTGCGCCACCTT-CATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 | | | ||||| ||||| ||| || | ||||| ||||||||| || | | Sbjct 840649 CAGTGAGTTGCGCTACCTTACAT-TCAGCTACTAGGTTACGCTTGAGACAACCGAATAGA 840707 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGG 152306 ||||| ||||| || ||| | || || || ||| |||| Sbjct 840708 ACCTTACGCTGCCCAGGCTTCCACCCATCGACTACG-GAGG 840747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212484137200