Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq190 179 4e-40 seq232 167 3e-36 seq2 132 5e-26 >seq190 Length=1127857 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| | |||||||| || |||||| | ||||| ||| | || Sbjct 281165 ATGCAAATATTCGTAAAGACTTTGACCGGCAAAACCATTACTTTGGAGGTCGAGCCCAGT 281224 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || |||||||| |||||||| ||||| ||||||||| Sbjct 281225 GACACTATCGAAAACGTCAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 281284 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| |||||||| || ||||| || || |||| ||| ||||| | ||||| ||| Sbjct 281285 CAGCGTCTGATTTTTGCGGGCAAGCAGCTTGAAGATGGTCGCACCCTTTCTGACTACAAT 281344 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| ||||||||| ||||| | ||||| | ||||| Sbjct 281345 ATTCAAAAGGAGAGCACTCTTCACCTAGTGCTTCGTCTCAGGGGTGG 281391 Score = 172 bits (190), Expect = 6e-38 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| | |||||||| || |||||| | ||||| ||| | || Sbjct 280526 ATGCAAATATTCGTAAAGACTTTGACCGGCAAAACCATTACTTTGGAGGTCGAGCCCAGT 280585 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || |||||||| |||||||| ||||| ||||||||| Sbjct 280586 GACACTATCGAAAACGTCAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 280645 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| |||||||| || ||||| || || |||| || ||||| | ||||| ||| Sbjct 280646 CAGCGTCTGATTTTTGCGGGCAAGCAGCTTGAAGATGGCCGCACCCTTTCTGACTACAAT 280705 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||||||||| ||| ||||| ||||| | ||||| Sbjct 280706 ATCCAAAAGGAGAGCACACTTCACCTAGTGCTTCGTCT 280743 Score = 147 bits (162), Expect = 2e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 || ||||| ||||| | ||||| ||| | |||| | || | ||| | ||||| || Sbjct 626508 GGTAAGACCATTACCTTGGAGGTCGAGCCCAGTGACACTATCGAAAACGTCAAGGCCAAG 626567 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 |||||||| |||||||| ||||| ||||||||||||||||| |||||||| || ||||| Sbjct 626568 ATTCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGCGTCTGATTTTTGCGGGCAAGCAG 626627 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 || || |||| ||||| || | ||||| || |||||||||| ||||||||| ||| Sbjct 626628 CTTGAAGATGGCCGTACTCTTTCGGACTACAACATCCAAAAGGAGAGCACTCTTCACCTA 626687 Query 27613 GTCTTGCGTCT 27623 || | ||||| Sbjct 626688 GTGCTTCGTCT 626698 >seq232 Length=639093 Score = 167 bits (184), Expect = 3e-36 Identities = 693/1077 (64%), Gaps = 30/1077 (3%) Strand=Plus/Minus Query 80695 TCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATC 80754 ||||||| ||| ||||| ||| || ||| |||| ||||| || || | | || Sbjct 595075 TCGAACGGGTAGCGCATCAGCATAAAGGTGTCCGCCAAACCCTGCACTCCTACACCAATA 595016 Query 80755 GGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATG 80814 || | |||||| | || || || |||||||| | || || |||| | || ||| Sbjct 595015 GGTCTGTGGCGATGATTGGACACCTTCGCCTCCGGCACAGGATAGTAGTTTCTGTCAATG 594956 Query 80815 ACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT 80874 | ||| |||||| ||||| || || | || || | | || || |||||| | Sbjct 594955 ATTTTGTTGAGGTTGTATGTAATGACACGGGAGACTTCGTACAACTTTTGGAAGTCGTAC 594896 Query 80875 T----GGTTCCCCT--TCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCC 80928 |||| || | ||||| | ||| || | ||| ||||| |||||||| ||| Sbjct 594895 GTGCGGGTTTCCTTGTTCACATACATCGGCAGCGCAATGGAAGCCAGGTTGCACACTGCC 594836 Query 80929 ACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTA 80988 |||||||| | ||| ||| ||||| || ||||| ||||| ||||| || || Sbjct 594835 ACCTCTTCTGGGGATGTGTACTGTACGATCTCACAGCACAGGTTAGATGACTTGATGGTT 594776 Query 80989 CCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTA 81048 |||||||| | ||||| ||||| || ||||| || |||||||| ||| | ||| || Sbjct 594775 CCCAGGTTCTGTTGGTTAGACTTTGCATTGCATGCATCCTTGTAAAGCATAAAAGGGTTA 594716 Query 81049 CCGGTCTCGACCTGTGACTT--GAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCT 81106 ||||| |||| | |||||| ||| || || ||||| | || | | Sbjct 594715 CCGGTTTCGA--TTTGACTTTGGAGAATAGCAAACCAAAGTGTTTGGGCAGGAATAGTTT 594658 Query 81107 TGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAA 81166 ||||| | ||| | |||| |||| || | ||||||| |||| || Sbjct 594657 TGCGGCCTAAGCCGGCTTGTTCATATTTGGTATATAACGCTTCGAACTCATCACCCCAAA 594598 Query 81167 GTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTA 81226 ||| || | ||||||| | ||||||||| ||| ||||||| | || | Sbjct 594597 CATCATACAGTCCGCGGCACTCATCAGGGCACATTAGGGTCCAGTCGCCATTTGCTTCGA 594538 Query 81227 CAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCC 81285 || |||||| || || || ||||| || || ||| ||||| || ||| || Sbjct 594537 CACGCTTCATAAACAGATCCGGAATCCACAGTGCATAGAATAGGTCACGTGCA-CGGCTT 594479 Query 81286 TCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGC 81345 ||||| || || || ||||| || || || |||||||| || || |||||||| Sbjct 594478 TCCTCGGATCCATGATTTTTCCGCAAGTCCAGGAAATCCATGATATCAGCGTGCCATGGT 594419 Query 81346 TCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCA 81402 |||| || | ||| | ||||||||||| | |||||||||| || || | ||| Sbjct 594418 TCCATGTATATGGCAAATGACCCCTTGCGCTTGCCACCACCCTGGTCTACATACCTTGCA 594359 Query 81403 GTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACG 81462 || || || |||| ||||||||| || | ||||||| || || || || || | Sbjct 594358 GTTGCATTGAATATACGCAACATTGGCACAATACCATTGCTCTTCCCATTGGTGCCACGG 594299 Query 81463 ATACGCGACCCCTTGGCGCGCACCTTGCTGA-TTGAAAGACCGATGCCACCTGACCACTT 81521 || || ||| |||| | | ||| ||| | ||| || || || || | ||||| Sbjct 594298 ATGTACGCCCCACTGGCCCTTATTTTG-TGACAGGCAAGGCCTATACCGCCAGCACACTT 594240 Query 81522 --TGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTC 81579 ||| || |||| || ||| |||||| | || || | | || | |||| Sbjct 594239 GCTGATGAATGCGCACTGCG--TCAATGTCTCAAAGATACCAGCTAATGAGTCATCTTTC 594182 Query 81580 ATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTT 81639 || || | ||||||||| || ||||| || || |||| | |||| |||| || Sbjct 594181 ATATCCAACAAGAAACAACTCGACATTTGTGGCCTTTGGGTACCGGAGAAAAACAACGTC 594122 Query 81640 GGGGTCGCGTGAATGAAATAACGGTTTGA--CATCAGGTCATAGGTTTCCTT--GACGCG 81695 || || || || ||||||| | ||| |||||||| ||| || | | |||| Sbjct 594121 GGCGTAGCATGGGTGAAATA--CTTCTGACTCATCAGGTGATATGTCTGAATCGTACGCT 594064 Query 81696 TGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTG-GGGCG 81751 | || || ||| |||||| || || || | ||| ||||||| ||| ||||| Sbjct 594063 CG--ATGTCTCCACAGTGAATGCCTGCCGCAACTCTCATTAACATGTGCTGCGGGCG 594009 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || | |||||| | || |||||||| ||||||||||| || || | |||||| Sbjct 595741 GTACGTAAATAGTAAACCCCGGTCTTGAGTCCCTTCTTCCATCCATAGAAGTGCATGCTC 595682 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 |||| || | | | || | ||||| ||||||| || || || |||||| || Sbjct 595681 GTGAGTTTGCCGAAGGAAGGCTGCTCCAGATAGATGTTGAGCGATTGGGACTGATCAATA 595622 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 || ||||||||||| ||||| ||||| || | || ||| |||||||| ||||| Sbjct 595621 AATATGCCACGATCTGCTGCCATATCAATGATAGTTTTCTGTTTTATTTCCCACACTGT 595563 >seq2 Length=2195431 Score = 132 bits (146), Expect = 5e-26 Identities = 188/259 (73%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 31993 AAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCT-GTCGAGTGACAT 32051 |||||| ||||| ||||| ||| || || |||||| ||||| || | ||| || Sbjct 840727 AAGCCTGGGCAGCGTAAGGTTCTATTCGGTTGTCTCAAGCGTAACCTAGTAGC-TGA-AT 840670 Query 32052 G-AAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGG 32110 | ||||| ||||| || | || ||||| |||||||| |||| ||||||||||| |||| Sbjct 840669 GTAAGGTAGCGCAACTCACTGGGTACGTAGCAGAGCATTCGGCTTATCACCACGGGGAGG 840610 Query 32111 CGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGA 32170 |||| || ||| || || |||| | || ||| |||| || || |||||||| | | Sbjct 840609 CGTCACTACAGCAAACGATCATCAATATGGCACAGGACTTCGTGGGATCAAATAACATCA 840550 Query 32171 ACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGA 32230 | |||| || || | |||||||||||| | ||| | ||||| |||||||| || Sbjct 840549 ATGTACTGGAACCCTGTGGACAGTTTGGAAGCCGAAAAGAAGGTGGAAAGGATGCATCGG 840490 Query 32231 GCTCCCGTTACATCTTCAC 32249 ||||||| |||||||| Sbjct 840489 CAGCCCGTTATATCTTCAC 840471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306735755680