Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq232 185 1e-41 >seq232 Length=639093 Score = 185 bits (204), Expect = 1e-41 Identities = 750/1161 (65%), Gaps = 38/1161 (3%) Strand=Plus/Minus Query 77472 TCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATA 77531 || ||||| || | | || ||||||| || || || ||||| ||||| | ||||||| Sbjct 595075 TCGAACGGGTAGCGCATCAGCATAAAGGTGTCCGCCAAACCCTGCACTCCTACACCAATA 595016 Query 77532 GGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATA 77591 ||||| || | | |||||| | || || || || | |||||| || || |||| || Sbjct 595015 GGTCTGTGGCGATGATTGGACACCTTCGCCTCCGGCACAGGATAGTAGTTTCTGTCAATG 594956 Query 77592 ATTTTATTGAGATT---TCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCA 77648 ||||| ||||| || | ||| || || | || || | | || | || || Sbjct 594955 ATTTTGTTGAGGTTGTATGTAATGAC-ACGGGAG--ACTTCGTACAACTTTTGGAAGTCG 594899 Query 77649 AATCT-------TCCATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAAC 77701 | | ||| | | | ||| |||| || || || || || || || || || Sbjct 594898 TACGTGCGGGTTTCCTTGT-TCACATACATCGGCAGCGCAATGGAAGCCAGGTTGCACAC 594840 Query 77702 TGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGAT 77761 ||| ||||| | | | | || |||| ||||| || || ||| | ||||| Sbjct 594839 TGCCACCTCTTCTGGGGATGTGTACTGTACGATCTCACAGCACAGGTTAGATGACTTGAT 594780 Query 77762 AGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGG 77821 || ||||| || |||||||| |||| |||||||| ||||| ||||| ||||| || Sbjct 594779 GGTTCCCAGGTTCTGTTGGTTAGACTTTGCATTGCATGCATCCTTGTAAAGCATAAAAGG 594720 Query 77822 AGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCAT 77881 | |||||||| || || || || ||||| ||| | | | | | | || Sbjct 594719 GTTACCGGTTTCGATTTGACTTTGGAGAATAGCAAACCAAA-GTGTTTGGGCAGGA--AT 594663 Query 77882 AGATTTGTATC----GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTC 77937 || |||| | ||| || |||||||| ||||||| | ||| || ||||| | Sbjct 594662 AGTTTTGCGGCCTAAGCCGG-CTTGTTCATATTTGGTATATAACGCTTCGAACTCATCAC 594604 Query 77938 CCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTT 77997 |||||||||||| || ||| |||| |||| |||||||| | | |||||| |||| | Sbjct 594603 CCCAAACATCATACAGTCCGCGGCACTCATCAGGGCACATTAGGGTCCAGTCGCCATTTG 594544 Query 77998 CCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTC 78057 | | || || |||||||| ||||| || ||||| || ||| ||||| || || | | Sbjct 594543 CTTCGACACGCTTCATAAACAGATCCGGAATCCACAGTGCATAGAATAGGTCACGTGCAC 594484 Query 78058 TATGTTCTTCATTTCCTGTATTCTTTTT----AAGATCGAGAAACTCCATAATATCAGAA 78113 ||| || ||| || ||||| ||| || || || ||||| ||||||| Sbjct 594483 GGCTTTCCTCGGATCC---ATGATTTTTCCGCAAG-TCCAGGAAATCCATGATATCAGCG 594428 Query 78114 TGCCATGGTTCTAGATATATTGC-CATAACTCCAGGTCGTTTATTACCTCCCTGATCTAT 78172 ||||||||||| | ||||| || || || || | || || ||| ||||| |||| Sbjct 594427 TGCCATGGTTCCATGTATATGGCAAATGACCCCTTG-CGCTTGCCACCACCCTGGTCTAC 594369 Query 78173 ATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTT-CCAT 78231 ||| || || || ||| | | | ||||||||| | |||||| || | | || |||| Sbjct 594368 ATACCTTGCAGTTGCATTGAATATACGCAACATTGGCACAATACCATT-GCTCTTCCCAT 594310 Query 78232 TTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTC 78291 | || ||| || || ||||| || | || || | || | ||||| || | Sbjct 594309 TGGTGCCACGGATGTACGCCCCACTGGCCCTTATTTTGTGACAGGCAAGGCCTATACCGC 594250 Query 78292 CTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGT 78351 | || ||| || | ||||| | ||||||| || ||||||| ||| || Sbjct 594249 CAGCACACTTGCTGATGAATGCGCACTGCGTCAATGTCTCAAAGATACCAGCTAATGAGT 594190 Query 78352 CATCCATCATGT-TAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTA 78410 |||| |||| | || ||| ||||| || |||||||| | || || | | Sbjct 594189 CATCTTTCATATCCAACAAG-AAACAACTCGACATTTGTGGCCTTTGGGTACCGGAGAAA 594131 Query 78411 AATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATA 78470 || || ||||| | ||||| || || | || | | | || | ||||| | ||| Sbjct 594130 AACAACGTCGGCGTAGCATGGGTGAAATACTTCTGACTCATCAGGTGATATGTCTGAATC 594071 Query 78471 GCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGG 78529 | || ||||| ||| | ||||| ||| |||| || | ||| ||||| ||||| || Sbjct 594070 GTACGCTCGATGTCTCCACAG-TGAATGCCTGCCGCAACTCTCATTAACATGTGCTGCGG 594012 Query 78530 TCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACC 78589 | || | |||| | ||||| | | |||||| || | ||| |||||||| Sbjct 594011 GCGCTCTGCGATCTTGTCGTTTATACGAAGAAGGTATGACCGCTCAAGAGTCTTAAAACC 593952 Query 78590 AAAATAGTTGTATGAAAAGTC 78610 ||| |||| |||| ||||| Sbjct 593951 AAAGTAGTCGTATTGGAAGTC 593931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694664336752960