Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq232 140 5e-28 >seq232 Length=639093 Score = 140 bits (154), Expect = 5e-28 Identities = 472/719 (66%), Gaps = 22/719 (3%) Strand=Plus/Minus Query 76498 TTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACA 76557 |||||||| ||||||||| ||| || ||||| ||||||||||||| || || | || Sbjct 594638 TTCATATTTGGTATATAACGCTTCGAACTCATCACCCCAAACATCATACAGTCCGCGGCA 594579 Query 76558 TTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATC 76617 |||| || ||||| | | ||| || |||| | | | || || |||||||| ||||| Sbjct 594578 CTCATCAGGGCACATTAGGGTCCAGTCGCCATTTGCTTCGACACGCTTCATAAACAGATC 594519 Query 76618 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTT 76677 || ||||| || ||| ||||| || || | | | ||| || ||| || || Sbjct 594518 CGGAATCCACAGTGCATAGAATAGGTCACGTGCACGGCTTTCCTCGGATCC---ATGATT 594462 Query 76678 TTT----AAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC-C 76732 ||| ||| || ||||| ||||| ||||||| ||||||||||| | ||||| || Sbjct 594461 TTTCCGCAAG-TCCAGGAAATCCATGATATCAGCGTGCCATGGTTCCATGTATATGGCAA 594403 Query 76733 ATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACT 76792 || || ||| || || ||| ||||| |||| ||| || ||||| ||| | | Sbjct 594402 ATGAC-CCCTTGCGCTTGCCACCACCCTGGTCTACATACCTTGCAGTTGCATTGAATATA 594344 Query 76793 CTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACAT 76852 | ||||||||| | ||| || || | ||||| || ||| || || |||| Sbjct 594343 CGCAACATTGGCACAATACCATTGCTCTTCCCATTGGTGCCACGGATGTACGCCCCACTG 594284 Query 76853 GCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTA--GAGCAC 76910 || | || || | | |||||||| || || || || ||| | | |||| Sbjct 594283 GCCCTTATTTTGTGACAGGCAAGGCCTATACCGCCAGCACACTTGCTGATGAATGCGCAC 594224 Query 76911 AGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGT-TAAGAAGAAAA 76969 ||| ||||||| ||| |||| || ||| ||||| |||| | || ||| ||| Sbjct 594223 TGCG--TCAATGTCTCAAAGATACCAGCTAATGAGTCATCTTTCATATCCAACAAG-AAA 594167 Query 76970 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTG 77029 || || |||||||| | || || | |||||| || || | ||||| ||| Sbjct 594166 CAACTCGACATTTGTGGCCTTTGGGTACCGGAGAAAAACAACGTCGGCGTAGCATGGGTG 594107 Query 77030 AACCATTTTTCAGAAAGTAGATTGTATGTTTCAAT--AACTGCTTCTATATC-CCATTGA 77086 || | || | | | || | ||||| | ||| || || || || || ||| | Sbjct 594106 AAATACTTCTGACTCATCAGGTGATATGTCTGAATCGTAC-GC-TCGATGTCTCCACAG- 594050 Query 77087 TGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTT 77146 ||||| ||| | || || | ||| ||||| ||||| || || ||| | |||| | ||| Sbjct 594049 TGAATGCCTGCCGCAACTCTCATTAACATGTGCTGCGGGCGCTCTGCGATCTTGTCGTTT 593990 Query 77147 ATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 77205 || | | |||||| || | ||| ||||||||||| |||| |||| ||||| Sbjct 593989 ATACGAAGAAGGTATGACCGCTCAAGAGTCTTAAAACCAAAGTAGTCGTATTGGAAGTC 593931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712929819396480