Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq190 168 1e-36 seq2 87.8 4e-12 >seq190 Length=1127857 Score = 168 bits (186), Expect = 1e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || ||||| || || || | ||||| || |||||||| |||||||||| ||| |||||| Sbjct 280743 AGACGAAGCACTAGGTGAAGTGTGCTCTCCTTTTGGATATTGTAGTCAGAAAGGGTGCGG 280684 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || || || || || ||||| |||| ||| || ||||| |||||||||||| Sbjct 280683 CCATCTTCAAGCTGCTTGCCCGCAAAAATCAGACGCTGCTGGTCTGGGGGAATACCCTCC 280624 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 || || || ||||| || || ||| | ||||||||||| | ||||| || | ||| Sbjct 280623 TTATCCTGAATCTTGGCCTTGACGTTTTCGATAGTGTCACTGGGCTCGACCTCCAAAGTA 280564 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||||||||| |||||||| ||||| Sbjct 280563 ATGGTTTTGCCGGTCAAAGTCTTTACGAATATTTGCAT 280526 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | || ||||| || || || | ||||| || ||||| || |||||||||| | Sbjct 281391 CCACCCCTGAGACGAAGCACTAGGTGAAGAGTGCTCTCCTTTTGAATATTGTAGTCAGAA 281332 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || || || || || ||||| |||| ||| || ||||| ||| Sbjct 281331 AGGGTGCGACCATCTTCAAGCTGCTTGCCCGCAAAAATCAGACGCTGCTGGTCTGGGGGA 281272 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| || || ||||| || || ||| | ||||||||||| | ||||| Sbjct 281271 ATACCCTCCTTATCCTGAATCTTGGCCTTGACGTTTTCGATAGTGTCACTGGGCTCGACC 281212 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||| || || || || ||||||||||| |||||||| ||||| Sbjct 281211 TCCAAAGTAATGGTTTTGCCGGTCAAAGTCTTTACGAATATTTGCAT 281165 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || ||||| || || || | ||||| || ||||||||||||||||| | ||| || ||| Sbjct 626698 AGACGAAGCACTAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCCGAAAGAGTACGG 626639 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || || || || || ||||| |||| ||| || ||||| |||||||||||| Sbjct 626638 CCATCTTCAAGCTGCTTGCCCGCAAAAATCAGACGCTGCTGGTCTGGGGGAATACCCTCC 626579 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 || || || ||||| || || ||| | ||||||||||| | ||||| || | || Sbjct 626578 TTATCCTGAATCTTGGCCTTGACGTTTTCGATAGTGTCACTGGGCTCGACCTCCAAGGTA 626519 Query 283062 ATCGTCTTACC 283072 || |||||||| Sbjct 626518 ATGGTCTTACC 626508 >seq2 Length=2195431 Score = 87.8 bits (96), Expect = 4e-12 Identities = 199/291 (68%), Gaps = 14/291 (5%) Strand=Plus/Plus Query 273831 CCAAACTGACCCTCGGG---CAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGA 273887 |||||||| || ||| ||||| || || ||||| || || ||| | ||||| Sbjct 840522 CCAAACTGTCCACAGGGTTCCAGTA--CA-TTGATGTTATTTGATCCCACGAAGTCCTGT 840578 Query 273888 GCCATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCG 273947 |||||||| | ||| || ||| || || |||| ||||||||||| || || || Sbjct 840579 GCCATATTGATGATCGTTTGCTGTAGTGACGCCTCCCCGTGGTGATAAGCCGAATGCTCT 840638 Query 273948 GCGATATAACCACTGAACTGAGCAACCTTCACAT--CGCTCGTCAAGTTTCGCTT--GAA 274003 || | || ||| ||| || || ||||| |||| ||| | | ||| ||||| || Sbjct 840639 GCTACGTACCCAGTGAGTTGCGCTACCTT-ACATTCAGCTACT-AGGTTACGCTTGAGAC 840696 Query 274004 TGCGGAATACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAATACT 274063 | ||||| | ||||| |||||| ||||| ||||||| || || || || || || Sbjct 840697 AACCGAATAGA--ACCTTACGCTGCCCAGGCTTCCACCCATCGACTACGGAGGGTATGCT 840754 Query 274064 GCGTTCCAAATCATACCGAGAGAACAAAATCAGTTCCTTGTCAATGAAGTC 274114 ||||| ||| || |||||| || |||||||||| |||||| || Sbjct 840755 ACGTTCGGTATCGTAAATGGAGAACTGGATAAGTTCCTTGTTAATGAAATC 840805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046732306568156