Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20divergens_20[genbank_20GCA_5F001077455.1_202014-09-06] 514 sequences; 10,797,556 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq190 109 1e-18 >seq190 Length=1127857 Score = 109 bits (120), Expect = 1e-18 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| ||||| || ||| | || || ||||| || || | ||||| || || ||| Sbjct 280529 CAAATATTCGTAAAGACTTTGACCGGCAAAACCATTACTTTGGAGGTCGA--GCCCAGTG 280586 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||| |||||||| ||||||||||| || || || || || || ||||||| Sbjct 280587 ACACTATCGAAAACGTCAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAGC 280646 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || || || || || || ||||| |||||||| | || ||| | || || || Sbjct 280647 AGCGTCTGATTTTTGCGGGCAAGCAGCTTGAAGATGGCCGCACCCTTTCTGACTACAATA 280706 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||| || ||||| || || || Sbjct 280707 TCCAAAAGGAGAGCACACTTCACCTAGT 280734 Score = 104 bits (114), Expect = 6e-17 Identities = 138/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| ||||| || ||| | || || ||||| || || | ||||| || || ||| Sbjct 281168 CAAATATTCGTAAAGACTTTGACCGGCAAAACCATTACTTTGGAGGTCGA--GCCCAGTG 281225 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||| |||||||| ||||||||||| || || || || || || ||||||| Sbjct 281226 ACACTATCGAAAACGTCAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAGC 281285 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || || || || || || ||||| |||||||| | || ||| | || || || Sbjct 281286 AGCGTCTGATTTTTGCGGGCAAGCAGCTTGAAGATGGTCGCACCCTTTCTGACTACAATA 281345 Query 178102 TCCAAAAAGA 178111 | ||||| || Sbjct 281346 TTCAAAAGGA 281355 Score = 102 bits (112), Expect = 2e-16 Identities = 124/167 (74%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 177947 AGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAA 178004 ||| || || || ||| | ||||| || || ||| |||| ||||| |||||||| Sbjct 626507 AGGTAAGACCATTACCTTGGAGGTCGA--GCCCAGTGACACTATCGAAAACGTCAAGGCC 626564 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||||||||| || || || || || || |||||||| || || || || || || || Sbjct 626565 AAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGCGTCTGATTTTTGCGGGCAAG 626624 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111 ||||| |||||||| | |||||| | || || ||| ||||||| || Sbjct 626625 CAGCTTGAAGATGGCCGTACTCTTTCGGACTACAACATCCAAAAGGA 626671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203723272677716