Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650055.1_202016-05-23] 234 sequences; 6,630,005 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq87 122 1e-22 seq131 89.7 6e-13 >seq87 Length=54381 Score = 122 bits (134), Expect = 1e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| || | ||| | ||||||||||||||| || ||| |||||||||||||| || | Sbjct 38365 TCCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGA 38306 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 |||||| || |||| ||||| ||||||||||| || || ||||| || || || | || Sbjct 38305 CAGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGG 38246 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | |||||| ||| ||| | || | || | | | | || || || | || | Sbjct 38245 AATTCCCTCCTTATCC-TGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTA 38187 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||||||||| ||||| || || || ||||| |||||||| Sbjct 38186 CTTCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCAT 38138 >seq131 Length=192580 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || || ||||| | || || || |||| || | || || ||||| || Sbjct 118652 TCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAA 118593 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 43111 || ||||| || || |||| || | | ||||||||| ||| | || | || | | Sbjct 118592 ATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCT-TGAATCTTAGCCTTTACATT 118534 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || || || | |||||| || | || |||||||| ||||| || || ||||| Sbjct 118533 TTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTAC 118474 Query 43172 AAAGATTTGCATTTTTAC 43189 ||| |||||||||||||| Sbjct 118473 AAATATTTGCATTTTTAC 118456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571815927433520