Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650055.1_202016-05-23] 234 sequences; 6,630,005 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq231 183 4e-41 seq114 114 2e-20 >seq231 Length=155543 Score = 183 bits (202), Expect = 4e-41 Identities = 640/989 (65%), Gaps = 30/989 (3%) Strand=Plus/Minus Query 79438 TCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCT 79497 || |||||||| ||||| || | ||| || || ||||||||||| |||||| |||||| Sbjct 72695 TCAGCTAATCCCTGAACTCCTACACCTATTGGCCTATGTCTCTTGTTAGAATATTCAGCC 72636 Query 79498 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTG 79557 || |||| ||| |||||||| ||||||||| |||| | ||| | || ||| Sbjct 72635 TCAGGAACAGGGTAATAATTCTCGTCTATAATTCTATTCAAATTGAAAGTAAGTATCTTG 72576 Query 79558 ACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCA----TCTA----TTACAAACATGT 79609 || | || | ||| |||||| || | | || ||||| || | Sbjct 72575 CAAGCAGAATGTAATAACTTAAAGTCAAAT--TCGAGAGTTTTAGTGTTTACATACTTTG 72518 Query 79610 TCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTA 79669 ||| || | || || || ||||| || || || ||||||| | | |||||| | | Sbjct 72517 GCAATGCTAGTGAAGCGAGGTTACACACTGCAACTTCATTAGGAGATGTATATTGCACAA 72458 Query 79670 TTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGT 79729 | || ||| | ||| ||| ||||||| || |||| || | ||||| ||| | | Sbjct 72457 TCTCGCAGCATAAGTTGCTAGACTTAATAGTACCTATGTTCTTCTGATTTGACTTGTAAT 72398 Query 79730 TACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCG 79789 |||| || ||||| || | ||| | ||||| || |||||||| || |||| || || | Sbjct 72397 TACAAGCGTCCTTGTATAACATGTAAGGAGTTCCTGTTTCAATTTGCGATTGTAAGATAG 72338 Query 79790 CTTTCCAGACGACTCGAGC-----CTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTA 79844 | ||| | | | | || || | || ||| | || | ||| | || Sbjct 72337 CAAACCAAAGGGTTTGCGCGGGAACTGTTTTGC-GACCCATGCCTTTCGACTCATAACTA 72279 Query 79845 TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTC 79904 ||| ||||| ||| || || ||||||||||| | |||| ||| ||| || || Sbjct 72278 GTGT----ATAATTTTTCAAATTCCTCTCCCCAAACCTGATCTAGTCCTCTACACTCATC 72223 Query 79905 AGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAAT 79964 || |||||||| | ||| | | ||| | | | || | |||||| || || || || || Sbjct 72222 TGGGCACATCAAAGTCCAGTTTTCATTAGCTTCAACCCTTTTCATGAAAAGGTCTGGGAT 72163 Query 79965 CCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAA 80023 ||| | || ||| || | || || | || |||||| || || ||| | Sbjct 72162 CCACAATGC-ATAGAACAAGTCCCTAGCCCTTGACTCCTCTGAACCATGGTTTTTTCGTA 72104 Query 80024 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCG 80083 |||| ||||| | | |||||||| |||||| || || | ||| ||||| | || Sbjct 72103 GATCTAGGAATTCAAAAATATCAGCATGCCATGGCTCTAGGTAGATGGCAAATGAACCTT 72044 Query 80084 GTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 80143 || ||| ||||||||||| | || | ||| || | ||| | | ||| | ||| | Sbjct 72043 TTCTTTTTCCCCCTCCCTGATCAACATAACGAGCAGTATCATTGAATATTCTGAGCATAG 71984 Query 80144 GAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACT---GGCACGAA 80200 | ||||| |||||||| ||||| || ||| || || | ||| |||||| | Sbjct 71983 GTATAATCCCATTGGAATGCCCATTTGTGCCGCGAATGTA---TGAACTGGAGGCACGTA 71927 Query 80201 TATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 80260 | || |||| || |||||| || ||||| | ||| || | ||| ||| | | | Sbjct 71926 TTTTGTGTATTGCTAAACCTATCCCTCCTGCTGTCTTACTAATGAGTGCACATTGGGTAA 71867 Query 80261 ACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACA 80320 || ||| | || || || |||||| | || | ||| || || |||||||||| Sbjct 71866 GGGTGTCAAAAATACCAGAAATAGAATCATCCTTAATATCAAGAAGGAAGCAGCTAGACA 71807 Query 80321 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 80380 |||| || ||||||| | || || | || |||| ||||| |||| |||| | Sbjct 71806 TTTGAGGAAATTTAGTTCCAGAGTTGAAGAGTGTGGGAGTGGCGTGGATAAATAATTTCT 71747 Query 80381 CAGACA-GTAGATTGTACGTCTCAATAGC 80408 |||| ||| |||||| ||||| || || Sbjct 71746 TGGACATGTA-ATTGTAAGTCTCCATGGC 71719 >seq114 Length=443145 Score = 114 bits (126), Expect = 2e-20 Identities = 114/144 (79%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 |||| ||||| | || ||| ||| ||||||||||| || |||||||||||||||| Sbjct 401669 ACATATAACATCCAAACTCGGCGTGTAGACCCTCGTCCCTGGAGATTAGTTCGTTGGAAA 401610 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG--ACCC 50069 | || || |||||||| || || || ||||| ||||||||||||| |||| | | |||| Sbjct 401609 AGGTTAGCCCGGGCATGAGCCCGCGTTTTTTCAGCCAAAATATGG-CGCAGAAGCTACCC 401551 Query 50070 AGAAAAGAAGATTCCTTCTACTGC 50093 ||||| || |||||||| ||||| Sbjct 401550 -GAAAATAAAATTCCTTCCACTGC 401528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718266699063760