Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650055.1_202016-05-23] 234 sequences; 6,630,005 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq131 131 2e-25 seq87 114 1e-20 >seq131 Length=192580 Score = 131 bits (144), Expect = 2e-25 Identities = 173/238 (73%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 94778 ACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCG 94837 ||||| ||||||| | ||||| ||||| | || ||||||||||| | |||||||| Sbjct 118691 ACTCCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT-- 118634 Query 94838 CTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTG 94895 || | ||||| || ||||||| |||||||| |||| |||| || ||| ||||| | Sbjct 118633 CTGAAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGG 118574 Query 94896 GAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT 94955 | ||||| || || ||||| | ||| || ||||| || | | ||| ||| | | Sbjct 118573 GGGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTT 118514 Query 94956 CGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTAC 95013 | || |||| || |||||||| || ||||| ||||| ||||| || ||||| |||| Sbjct 118513 CCACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATTTTTAC 118456 >seq87 Length=54381 Score = 114 bits (126), Expect = 1e-20 Identities = 170/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 94767 TAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCA 94826 ||||| ||| |||| || | |||| ||||||||| ||||||||||| || ||||| | Sbjct 38378 TAAAAAATTAGTCTCCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAA 38319 Query 94827 CGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || || |||| | || || || || || || |||| || | || || Sbjct 38318 TATTGTAGTCTGACAGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTT 38259 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | ||||| || ||||| || || || || | ||| || ||||| || ||| ||| | Sbjct 38258 GTTGATCAGGTGGAATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTTTCGATAGTAT 38199 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 || | | || || || | ||||||||||| || || || ||||||||||| || |||| Sbjct 38198 CACTGGGCTCTACTTCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCA 38139 Query 95007 T 95007 | Sbjct 38138 T 38138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289888748240