Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650055.1_202016-05-23] 234 sequences; 6,630,005 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq110 197 5e-45 seq83 192 2e-43 seq131 140 1e-27 seq87 102 3e-16 seq75 95.1 5e-14 >seq110 Length=597968 Score = 197 bits (218), Expect = 5e-45 Identities = 472/702 (67%), Gaps = 20/702 (3%) Strand=Plus/Minus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || ||||| |||||| | |||||||| | |||||||| || |||| |||||| || | Sbjct 219678 GCTATTGGGATTGATTTGGGAACCACTTACTCATGTGTTGGCGTTTGGAAAAATGAAACT 219619 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 |||||||||||||| ||||| ||||| || || ||||| || | || || || Sbjct 219618 GTAGAAATTATAGCCAATGATCAAGGCAACCGTACAACTCCGTCTTATGTTGCCTTCACT 219559 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAAA--TCA--ATGGTAAATTCAAATGCCAA 451089 ||| || || | | || | || || ||| ||| ||| || | ||| | | Sbjct 219558 GATGTGGAGCGATTGGTTGGCGACGCCGCCAAAAATCAGGATGCTAGA----AATCCTGA 219503 Query 451090 AAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATAC-TGTA- 451147 ||||||||| | |||||| ||| | || || || | | | || | ||||| | || | Sbjct 219502 AAACACAGTTTTTGATGCAAAAAGATTGATAGGGAGAAAG-ATCA--ATGATCCCTGCAT 219446 Query 451148 -CAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAA--AAAGGAAAGCCCTAT 451204 |||| || | |||| || | | | ||| | | | ||| || | ||| | Sbjct 219445 CCAAAGTGATATAAAACACTGGCCATTTACTGTTGCGGCTGGACCAAATGATAAGCCTGT 219386 Query 451205 ATTCAAG-TAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTAT 451263 ||||| || | | | | |||||||||||| | || || || ||||| || ||||| Sbjct 219385 GATCAAGGTACAATTTCAGGGTGAAACTAAATCCTTCCACCCAGAGGAAATATCTTCTAT 219326 Query 451264 GGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGC 451323 ||| || || || ||||| |||| |||||| ||| | || || | || |||| Sbjct 219325 GGTCCTCACCAAGATGAAGGAAATTGCAGAATCTTATTTGGGAAAGACAATCTCTAATGC 219266 Query 451324 AGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG 451383 || || ||||| ||||||||||| || ||| | ||||| || || ||||| || || || Sbjct 219265 TGTTATCACTGTACCCGCTTATTTTAACGATTCTCAACGACAGGCCACTAAGGACGCTGG 219206 Query 451384 ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGC 451443 |||||||| ||||||||| | || ||||| |||||||| || || || || | || Sbjct 219205 TACCATTGCTGGGTTAAATGTTATGCGTATTATCAATGAACCAACTGCTGCCGCAATTGC 219146 Query 451444 ATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGG 451503 ||||| | ||| || |||| || ||||||||| | || | || ||||| || Sbjct 219145 CTATGGTAT-GGACAA--GAAAGGTACTTCTGAAAAAAATGTGTTGATTTTCGATTTGGG 219089 Query 451504 TGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGC 451563 || || ||| ||| || | | | || |||||||| | ||||| |||||||| Sbjct 219088 CGGTGGCACTTTCGATGTATCAATTTTAACTATCGAAGATGGCATTTTTGAGGTAAAGGC 219029 Query 451564 AACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || | |||||||| || | || ||||| || |||| || Sbjct 219028 CACACAAGGTGATACCCACTTGGGCGGTGAGGACTTTGACAA 218987 Score = 134 bits (148), Expect = 5e-26 Identities = 435/664 (66%), Gaps = 16/664 (2%) Strand=Plus/Minus Query 451896 ATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATG-TTGTCT 451954 ||||| | || |||||||||||||| || || || ||||| || || | || || Sbjct 218693 ATGAAGTGGTACTTGTAGGAGGTTCGACCCGTATCCCTAAGATACAGCAATTGATTAAGG 218634 Query 451955 TCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATAT 452014 ||| ||| || ||| ||| || || | || || || ||||| || || ||| Sbjct 218633 ACTT-TTTCAATGGCAAAGAACCCTGCAAATCAATTAACCCAGACGAAGCAGTAGCCTAT 218575 Query 452015 GGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATT 452074 || || || ||||| || || ||| |||| || | | | || | |||| | Sbjct 218574 GGCGCGGCTGTTCAGGCTGCAATTTTAACTGGCGAACAATCTAGCAAGGTCCAAGATTTA 218515 Query 452075 CTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACT 452134 |||||| ||||||| || || || || || ||| |||| || || || || | ||||| Sbjct 218514 CTGTTACTAGATGTCACTCCACTGTCACTAGGACTTGAGACCGCCGGCGGTGTTATGACC 218455 Query 452135 AATTTAATTAAACGAGGAA--CTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAG 452192 | || | | || || || |||| || || ||| ||| ||||| || Sbjct 218454 GTGCTGAT--ACCCAGAAATACTACTATCCCCGCCAAGAAGGAACAAGAATTTACAAC-- 218399 Query 452193 CAAGTGA---TAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGA 452249 ||| ||| ||||||| | || || | || || || || |||||||||||| | |||| Sbjct 218398 CAA-TGAAAATAACCAAACGGGGGTTATGATCCAGGTCTTCGAAGGAGAACGTTCTATGA 218340 Query 452250 CACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGG 452309 || | || || ||| |||||| |||| | | | ||| |||||| ||||| | Sbjct 218339 CATGTGACAACAATTTACTAGGCAAATTCCATTTGACTGGCATACCTCCTGCTCCAAGAG 218280 Query 452310 GAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTG 452369 || ||| || ||| || | |||| ||| | ||||| |||||||| | | ||| || Sbjct 218279 GAGTTCCCCAGATTAAAGTCACCTTTGACATCGATGCCAATGGTATATTGACAGTGTCTG 218220 Query 452370 CAGTTGAAAAATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTT 452429 | | || || || | ||||| | ||| | | || || || ||||| || | Sbjct 218219 CTGCCGACAAGTCGACAGGAAAGACTGAACATGTAACTATAACAAATGACAAGGGAAGAC 218160 Query 452430 TATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATG 452489 | || | |||| ||||| | ||||| | ||||||||| || || | ||| ||||||| Sbjct 218159 TTTCACAGCAAGACATTGATAGGATGGTTGCTGAAGCAGAGAAGTTTAGGGAAGATGATG 218100 Query 452490 AACAAGTTAGAAAA--CATGTTGAAGCTAAAAACAAACTAGAAGGATATTGTTATCAAAT 452547 || ||| |||| | ||||||| | || || |||| || ||||||||| ||| Sbjct 218099 AA-AAG-AAGAAGAGGTGTGTTGAATCCAAGAATGAACTTGAGAACTATTGTTATTCAAT 218042 Query 452548 GAAA 452551 |||| Sbjct 218041 GAAA 218038 >seq83 Length=15640 Score = 192 bits (212), Expect = 2e-43 Identities = 220/293 (75%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 451311 CAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAA 451370 |||||| |||| || | || ||||| || ||||| |||||||| || || ||||| | Sbjct 10536 CAGTTAAAAATGCCGTTGTGACAGTTCCTGCATATTTTAATGATGCCCAGCGCCAAGCTA 10595 Query 451371 CTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAG 451430 | ||||||||||| || ||||||||||| ||||| | || || | |||||||| |||| Sbjct 10596 CCAAAGATGCAGGTCAAATTGCTGGTTTGAATGTATTACGTATACTCAATGAACCCACAG 10655 Query 451431 CAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAG 451490 | |||||| | || ||||| || || ||| || || ||||||||||||||||| | Sbjct 10656 CCGCTGCTATTGCTTATGGTCT-TGACAAT--AAGGA---TGAAGAAAAAAATATTTTGG 10709 Query 451491 TATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTAT 451550 | | |||| | ||||| || ||| |||| ||| ||||| ||||||| | || |||| Sbjct 10710 TCTATGATCTCGGTGGTGGTACTTTTGATGTTTCCCTACTTACAATTGACAACGGTGTAT 10769 Query 451551 TTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 ||||||| | || || || |||||||| || || ||||||||| ||||| Sbjct 10770 TTGAAGTCATAGCGACATCAGGAGATACTCACCTCGGCGGTGAAGATTTTGAT 10822 >seq131 Length=192580 Score = 140 bits (154), Expect = 1e-27 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || |||||||| || |||||||| || || ||||| || ||| | Sbjct 118461 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 118520 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||||| | | || || |||||||| ||||| |||||||| || ||||| Sbjct 118521 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 118580 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 |||||| ||||||| | || |||||| | || || || | || | | |||||||| Sbjct 118581 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGATTATAA 118640 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| | || ||||||||||| ||||| |||||||| Sbjct 118641 CATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGG 118685 >seq87 Length=54381 Score = 102 bits (112), Expect = 3e-16 Identities = 136/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112 ||||||| || |||||||| || |||||||| || || | || || || | |||| Sbjct 38143 AATATTT--GTGAAAACACTCACGGGTAAAACCATCACATTGGAAGTAGAGCCCAGTGAT 38200 Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172 | || ||| | |||| || ||||| |||||||| |||||||| |||||||||||| Sbjct 38201 ACTATCGAAAATGTTAAGGCTAAGATTCAGGATAAGGAGGGAATTCCACCTGATCAACAA 38260 Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATT 391232 || | ||||| | || || ||||| ||||| || | ||| || | || || |||||| Sbjct 38261 CGACTGATTTTTGCTGGTAAGCAACTAGAAGACGGCCGCACTCTGTCAGACTACAATATT 38320 Query 391233 GATAAGGA 391240 | || || Sbjct 38321 CAAAAAGA 38328 >seq75 Length=144360 Score = 95.1 bits (104), Expect = 5e-14 Identities = 229/344 (67%), Gaps = 11/344 (3%) Strand=Plus/Minus Query 451260 CTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTG 451319 |||| ||| | | |||||||| |||||||||||| | | ||| || || | Sbjct 103585 CTATTGTTTTATCAAAAATGAAGGAAACAGCAGAAGCTCACTTGGGTAGACCTGTGAGAA 103526 Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 | ||||| || || || ||||||||||| || ||| ||||| | || || || || |||| Sbjct 103525 AAGCAGTGATAACGGTACCCGCTTATTTTAACGATTCACAAAGACAGGCGACAAAGGATG 103466 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || | || || ||| | | ||| | | || ||||| ||||| || |||||||| | Sbjct 103465 CGGGTAAGATCGCAGGTCTTGAAGTTTTGAGGATAATTAACGAACCAACGGCAGCTGCGC 103406 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATT 451499 | || | ||| | | | ||||| || | |||| ||| ||||| ||||| Sbjct 103405 TTGCCTTTGGTTTGG-------AGAAGAA--TGATGGTAAAACAATTGCAGTATATGATT 103355 Query 451500 TTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAA 451559 | || || || || |||| ||| | || || | || || |||||||||| Sbjct 103354 TGGGCGGTGGCACCTTCGATATCTCTATCCTGGAGATATTGGGCGGTGTGTTTGAAGTAA 103295 Query 451560 AGGCAACCAATGGTGATAC-TCATCTAGGAGGTGAAGATATTGA 451602 | ||||| ||||| | || |||| | || || ||||| |||| Sbjct 103294 AAGCAACTAATGGAAACACTTCAT-TGGGGGGCGAAGACTTTGA 103252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975712476549272