Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650055.1_202016-05-23] 234 sequences; 6,630,005 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq110 517 1e-141 seq83 199 5e-46 seq131 163 4e-35 seq87 161 1e-34 seq75 120 4e-22 >seq110 Length=597968 Score = 517 bits (572), Expect = 1e-141 Identities = 1078/1591 (68%), Gaps = 25/1591 (2%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 |||||||| || ||||| ||||| ||||||||||||||||| || ||| ||||||| | Sbjct 219678 GCTATTGGGATTGATTTGGGAACCACTTACTCATGTGTTGGCGTTTGGAAAAATGAAACT 219619 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 ||||| ||||| | ||||| ||||| |||||||||||||| || || |||||||| || Sbjct 219618 GTAGAAATTATAGCCAATGATCAAGGCAACCGTACAACTCCGTCTTATGTTGCCTTCACT 219559 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 ||| || || | ||||| || ||||| ||||||||| |||| || ||| || Sbjct 219558 GATGTGGAGCGATTGGTTGGCGACGCCGCCAAAAATCAGGATGCTAGAAATCCTGAAAAC 219499 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || || ||||| || || | | || || | ||| | ||| ||||| Sbjct 219498 ACAGTTTTTGATGCAAAAAGATTGATAGGGAGAAAGATCAATGATCCCTGCATCCAAAGT 219439 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 |||||||| ||||| | | | |||| | || |||||||||| |||| || Sbjct 219438 GATATAAAACACTGGCCATTTACTGTTGCGGCTGGACCAAATGATAAGCCTGTGATCAAG 219379 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTG 195658 || ||||||| ||||| | ||| || || || ||||| || |||||||| | Sbjct 219378 GTACAATTTCAGGGTGAAACTAAATCCTTCCACCCAGAGGAAATATCTTCTATGGTCCTC 219319 Query 195659 ATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 | ||||||||||| | ||| ||||||| |||| || || | |||| ||| | Sbjct 219318 ACCAAGATGAAGGAAATTGCAGAATCTTATTTGGGAAAGACAATCTCTAATGCTGTTATC 219259 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 |||||||| ||||| || | ||||| ||||||||||| || |||||||||| | | ||| Sbjct 219258 ACTGTACCCGCTTATTTTAACGATTCTCAACGACAGGCCACTAAGGACGCTGGTACCATT 219199 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || || |||| | | | ||||||||||||||||| || || |||||||| |||||| Sbjct 219198 GCTGGGTTAAATGTTATGCGTATTATCAATGAACCAACTGCTGCCGCAATTGCCTATGGT 219139 Query 195839 CTGGACAAGAACAAGGAC-GAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTAC 195897 |||||||||| | | || || |||||||| ||||| || ||| | || ||||| || Sbjct 219138 ATGGACAAGAA-AGGTACTTCTGAAAAAAATGTGTTGATTTTCGATTTGGGCGGTGGCAC 219080 Query 195898 GTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGG 195957 || ||||| ||| || | | ||| |||| ||| || || || |||||||| || || Sbjct 219079 TTTCGATGTATCAATTTTAACTATCGAAGATGGCATTTTTGAGGTAAAGGCCACACAAGG 219020 Query 195958 TGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCT-GATG 196016 |||||| || | || ||||| || || || || || | | |||| | |||| Sbjct 219019 TGATACCCACTTGGGCGGTGAGGACTTTGA-CAACAGATTGGTCAACTTTTGCGTAGATG 218961 Query 196017 AGTTCCGTCGAAAGAAT---AAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGC 196073 | || ||||||||| ||| ||||||| ||| | || | ||| | | Sbjct 218960 ACTTTAAGCGAAAGAATGGCGGGAAGAATATTTCAACCAATAGACGTGCATTACGTAGAC 218901 Query 196074 TTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAA-ACA----AT 196128 |||| || |||||||||||| ||||| || ||| | | ||||| ||| | Sbjct 218900 TTAGAACACAATGTGAACGTGCTAAACGCAC-----CTTATCCCACTCAACACAGGCCAC 218846 Query 196129 GGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTC-TATACAACTATTACCCGTGCAC 196187 | ||| | || | | ||||| || || |||| | | |||| || || | || Sbjct 218845 GATTGTTGTAGAAGCTATATTTGATGGCATCGACTACAGTTGCAAC-ATCACTAGGGCCA 218787 Query 196188 GTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTAC 196247 | || || ||| | | || |||| | || | | || || ||| ||| | Sbjct 218786 GATTCGAGGAGCTCTGTGCCGAAATGTTCAAAAACACTTTAATCCCAGTCGAAAAAG-CC 218728 Query 196248 TTCG-TGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCA 196306 || | ||| ||| | ||||||||| || | ||||| | || ||||| ||||| || Sbjct 218727 TTAGCTGATGCAGATATGGATAAGAAGCAGATCCATGAAGTGGTACTTGTAGGAGGTTCG 218668 Query 196307 ACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAAC 196366 |||||||| || ||||| || || || || ||| |||||| ||||| | Sbjct 218667 ACCCGTATCCCTAAGATACAGCAATTGATTAAGGACTTTTTCAATGGCAAAGAACCCTGC 218608 Query 196367 AAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTC 196426 ||| | || ||||| || |||||||| || ||||| ||||| ||||||||||| ||| | Sbjct 218607 AAATCAATTAACCCAGACGAAGCAGTAGCCTATGGCGCGGCTGTTCAGGCTGCAATTTTA 218548 Query 196427 TCAGGTGTTGACAA--TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTAT 196484 | || | |||| || || ||||||||| | ||| |||| ||||| | || | | Sbjct 218547 ACTGGCG--AACAATCTAGCAAGGTCCAAGATTTACTGTTACTAGATGTCACTCCACTGT 218490 Query 196485 CCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTA 196544 | || || ||||| || || || ||||||||||| | || || || || |||| Sbjct 218489 CACTAGGACTTGAGACCGCCGGCGGTGTTATGACCGTGCTGATACCCAGAAATACTACTA 218430 Query 196545 TTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATA 196604 | || | ||||||||||||| ||| |||| || |||| ||| | || ||| | Sbjct 218429 TCCCCGCCAAGAAGGAACAAGAATTTACAACCAATGAAAATAACCAAACGGGGGTTATGA 218370 Query 196605 TTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCG 196664 | || || | ||||||||||| || || || ||| || |||| || | ||| Sbjct 218369 TCCAGGTCTTCGAAGGAGAACGTTCTATGACATGTGACAACAATTTACTAGGCAAATTCC 218310 Query 196665 ATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATA 196724 ||||||| || || || |||| || ||||| ||||| |||||||| || ||| || | Sbjct 218309 ATTTGACTGGCATACCTCCTGCTCCAAGAGGAGTTCCCCAGATTAAAGTCACCTTTGACA 218250 Query 196725 TAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAA 196784 | || || ||||| || | | || | |||| |||||| | | || || ||||| Sbjct 218249 TCGATGCCAATGGTATATTGACAGTGTCTGCTGCCGACAAGTCGACAGGAAAGACTGAAC 218190 Query 196785 AGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTC 196844 | | || || ||||||||||| | ||||| || | || ||||| | |||||| Sbjct 218189 ATGTAACTATAACAAATGACAAGGGAAGACTTTCACAGCAAGACATTGATAGGATGGTTG 218130 Query 196845 AAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 || || || |||| |||||||| || || Sbjct 218129 CTGAAGCAGAGAAGTTTAGGGAAGATGATGA 218099 >seq83 Length=15640 Score = 199 bits (220), Expect = 5e-46 Identities = 234/312 (75%), Gaps = 6/312 (2%) Strand=Plus/Plus Query 195678 CGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCA 195737 || || ||||| | ||| | || || ||| |||| |||||||| || ||||| || || | Sbjct 10516 CGAAAACTTTC-TCGGTCAGACAGTTAAAAATGCCGTTGTGACAGTTCCTGCATATTTTA 10574 Query 195738 GTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTA 195797 |||| | || || || || || || || || | | ||||| ||| | || ||| ||| Sbjct 10575 ATGATGCCCAGCGCCAAGCTACCAAAGATGCAGGTCAAATTGCTGGTTTGAA-TGTATTA 10633 Query 195798 -GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGAC 195856 | || |||||||||| ||||| ||||| |||||||||||||| ||||| || ||| Sbjct 10634 CGTATACTCAATGAACCCACAGCCGCTGCTATTGCTTATGGTCTTGACAATAA---GGAT 10690 Query 195857 GAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTC 195916 ||||| |||||| | ||| ||| |||||||||||||||||| |||||||| || || || Sbjct 10691 GAAGAAAAAAATATTTTGGTCTATGATCTCGGTGGTGGTACTTTTGATGTTTCCCTACTT 10750 Query 195917 AATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGT 195976 | ||||| ||| |||| ||||| | || || | || |||||||| || || ||| Sbjct 10751 ACAATTGACAACGGTGTATTTGAAGTCATAGCGACATCAGGAGATACTCACCTCGGCGGT 10810 Query 195977 GAAGATTTCGAT 195988 |||||||| ||| Sbjct 10811 GAAGATTTTGAT 10822 >seq131 Length=192580 Score = 163 bits (180), Expect = 4e-35 Identities = 179/237 (76%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 171853 ACTAGTAGTA-TGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGT 171911 ||||||| | ||||||| ||||| ||||| ||||| || ||||| || ||||| ||||| Sbjct 118452 ACTAGTAAAAATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGT 118511 Query 171912 TGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCC 171971 || | || || || || || | || || ||||||||||| ||||| || ||||| Sbjct 118512 GGAACCTAGTGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCC 118571 Query 171972 ACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGC 172031 |||||||| |||||||| ||||||||||| ||||| | || || || ||||| || | Sbjct 118572 CCCCGATCAACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTC 118631 Query 172032 TGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 ||||| ||| | |||||||| || || || ||| | || ||||||| | ||||| Sbjct 118632 AGATTATAACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGG 118688 >seq87 Length=54381 Score = 161 bits (178), Expect = 1e-34 Identities = 155/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 ||||||||| ||||||||||| || || || ||||| ||||| | || || ||| | Sbjct 38137 TATGCAAATATTTGTGAAAACACTCACGGGTAAAACCATCACATTGGAAGTAGAGCCCAG 38196 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 || || ||||| || | || || |||||||| |||||||| || |||||||| ||||| Sbjct 38197 TGATACTATCGAAAATGTTAAGGCTAAGATTCAGGATAAGGAGGGAATTCCACCTGATCA 38256 Query 171981 GCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAA 172040 |||||||| |||||||||||||| || || ||||| || || || || | || ||||| Sbjct 38257 ACAACGACTGATTTTTGCTGGTAAGCAACTAGAAGACGGCCGCACTCTGTCAGACTACAA 38316 Query 172041 CGTTCAAAAGGAGTCTACT 172059 ||||||| ||||||||| Sbjct 38317 TATTCAAAAAGAGTCTACT 38335 >seq75 Length=144360 Score = 120 bits (132), Expect = 4e-22 Identities = 229/331 (69%), Gaps = 16/331 (5%) Strand=Plus/Minus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 || |||||||| || || ||| || | |||||| | |||||| | | ||||| | || Sbjct 103571 AAAATGAAGGAAACAGCAGAAGCTCACTTGGGTAGACCTGTGAGAAAAGCAGTGATAACG 103512 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 ||||| ||||| || | ||||||||| |||||||||||||||| || | | || || Sbjct 103511 GTACCCGCTTATTTTAACGATTCACAAAGACAGGCGACAAAGGATGCGGGTAAGATCGCA 103452 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 ||||| | | | || || || || |||||||| || ||||| |||| | |||| || Sbjct 103451 GGTCTTGAAGTTTTGAGGATAATTAACGAACCAACGGCAGCTGCGCTTGCCTTTGGTTTG 103392 Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTG--ATCTTTGATCTCGGTGGTGGTACGT 195899 || |||| | || | ||||| |||| | | |||| | || ||||| || | Sbjct 103391 GAGAAGA------ATGATGGTAAAA--CAATTGCAGTATATGATTTGGGCGGTGGCACCT 103340 Query 195900 TTGATGTCTCACTTCT--CAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGG 195957 | ||| |||| | || |||||| || ||| | || |||||||| || ||| ||| Sbjct 103339 TCGATATCTCTATCCTGGAGATATTG--GGCGGTGTGTTTGAAGTAAAAGCAACTAATGG 103282 Query 195958 TGATAC-TCATCTAGGTGGTGAAGATTTCGA 195987 | || |||| | || || ||||| || || Sbjct 103281 AAACACTTCAT-TGGGGGGCGAAGACTTTGA 103252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657860475752480