Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650055.1_202016-05-23] 234 sequences; 6,630,005 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq110 439 8e-118 seq83 192 2e-43 seq87 179 1e-39 seq131 170 6e-37 seq171 96.9 1e-14 seq231 95.1 4e-14 >seq110 Length=597968 Score = 439 bits (486), Expect = 8e-118 Identities = 986/1466 (67%), Gaps = 39/1466 (3%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| || || ||||| || || ||||| || ||||||| |||||| ||||||| | Sbjct 219678 GCTATTGGGATTGATTTGGGAACCACTTACTCATGTGTTGGCGTTTGGAAAAATGAAACT 219619 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 |||||||| || || ||||||||||| ||| | ||||| || || || ||||| || || Sbjct 219618 GTAGAAATTATAGCCAATGATCAAGGCAACCGTACAACTCCGTCTTATGTTGCCTTCACT 219559 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || ||||| || |||| || | || |||||||| | |||| ||||| |||| Sbjct 219558 GATGTGGAGCGATTGGTTGGCGACGCCGCCAAAAATCAGGATGCTAGAAATCCTGAAAAC 219499 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || ||||||||||| || || | || || |||| | ||| | | ||| | Sbjct 219498 ACAGTTTTTGATGCAAAAAGATTGATAGGGAGAAAGATCAATGATCCCTGCATCCAAAGT 219439 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 ||| ||||||| | || |||||||||| | | |||||| || | || || Sbjct 219438 GATATAAAACACTGGCCATTTACTGTTGCGGCTGGACCAAATGATAAGCCTGTGATCAAG 219379 Query 349499 GTTGAATATAAAGGTGAA-CAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTTT 349556 || ||| | | |||||| | ||| | || |||| || ||||| || || ||||| Sbjct 219378 GTACAATTTCAGGGTGAAACTAAATCC--TTCCACCCAGAGGAAATATCTTCTATGGTCC 219321 Query 349557 TAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTA 349616 | || |||||||||||||| ||| | ||||| || | ||| | || ||||||||| Sbjct 219320 TCACCAAGATGAAGGAAATTGCAGAATCTTATTTGGGAAAGACAATCTCTAATGCTGTTA 219261 Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676 | |||||||| || |||||||| ||| | || || || || || || ||||| | || Sbjct 219260 TCACTGTACCCGCTTATTTTAACGATTCTCAACGACAGGCCACTAAGGACGCTGGTACCA 219201 Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736 |||| |||||||||||| | | || || |||||||| |||||||| |||||||| |||| Sbjct 219200 TTGCTGGGTTAAATGTTATGCGTATTATCAATGAACCAACTGCTGCCGCAATTGCCTATG 219141 Query 349737 GGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTA 349796 | | || || | || ||||||||| | | ||||| ||||| || ||||| | Sbjct 219140 GTATGGACAAGAAAGGTACTTCTGAAAAAAATGTGTTGATTTTCGATTTGGGCGGTGGCA 219081 Query 349797 CTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTG 349856 |||| ||||||||| | |||| | ||||| || |||||||| || || || || | Sbjct 219080 CTTTCGATGTATCAATTTTAACTATCGAAGATGGCATTTTTGAGGTAAAGGCCACACAAG 219021 Query 349857 GTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT--GTTAA 349914 ||||||| || | || || || || ||||| || | | | || |||| || | Sbjct 219020 GTGATACCCACTTGGGCGGTGAGGACTTTGACAACAGATTGG--TCAACTTTTGCGTAGA 218963 Query 349915 AGAATTTAAGCGTCAAGCTAAAATTG--------ATATTGGAGATAATCCTAGAGCAATG 349966 || |||||||| || | ||| | ||||| | ||| | ||| | Sbjct 218962 TGACTTTAAGCG--AA---AGAATGGCGGGAAGAATATTTCAACCAATAGACGTGCATTA 218908 Query 349967 CGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACT--ACCCAAA 350024 ||| | || ||||| |||||||||||||| || ||||||| | ||| || || Sbjct 218907 CGTAGACTTAGAACACAATGTGAACGTGCTAAACGCACCTTATC--CCACTCAACACAGG 218850 Query 350025 CCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTC-TTTTCATCTATTACACGT 350083 || | |||| | || || | |||||||| || | | || || | || || | Sbjct 218849 CCACGATTGTTGTAGAAGCTATATTTGATGGCATCGACTACAGTTGCAAC-ATCACTAGG 218791 Query 350084 GCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGA--TCCTGTGGAAA 350141 || | || || || | ||| || | || | | |||| | | || || |||| Sbjct 218790 GCCAGATTCGAGGAGCTCTGTGCCGAAATGTTCAAA--AACACTTTAATCCCAGTCGAAA 218733 Query 350142 AAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTG 350201 ||| ||| |||||| | ||| || || ||||| ||||||| || | || || | Sbjct 218732 AAGCCTTAGCTGATGCAGATATGGATAAGAAGCAGATCCATGAAGTGGTACTTGTAGGAG 218673 Query 350202 GTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC 350261 |||| || ||||| || || | || || || | || ||||| ||||||||||||| Sbjct 218672 GTTCGACCCGTATCCCTAAGATACAGCAATTGATTAAGGACTTTTTCAATGGCAAAGAAC 218613 Query 350262 CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTA 350321 | | | ||||||||| ||||| ||||| || || ||||| || ||||||||||| | | Sbjct 218612 CCTGCAAATCAATTAACCCAGACGAAGCAGTAGCCTATGGCGCGGCTGTTCAGGCTGCAA 218553 Query 350322 TTTTATCTGG-AAATAAGAGTTCT---AAAATTGATGATCTATTACTACTAGATGTAACT 350377 ||||| |||| || || ||| || | | ||| || | |||||||||| ||| Sbjct 218552 TTTTAACTGGCGAACAA----TCTAGCAAGGTCCAAGATTTACTGTTACTAGATGTCACT 218497 Query 350378 CCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAAT 350437 ||||| || || ||| | || || | || | || ||||| || || || || |||||| Sbjct 218496 CCACTGTCACTAGGACTTGAGACCGCCGGCGGTGTTATGACCGTGCTGATACCCAGAAAT 218437 Query 350438 AGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCG 350497 | |||| | || | || ||| ||| ||| | || || | |||| || | | | Sbjct 218436 ACTACTATCCCCGCCAAGAAGGAACAAGAATTTACAACCAATGAAAATAACCAAACGGGG 218377 Query 350498 GTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGA 350557 || | || || || || ||||| |||||| || || || || ||| ||| || Sbjct 218376 GTTATGATCCAGGTCTTCGAAGGAGAACGTTCTATGACATGTGACAACAATTTACTAGGC 218317 Query 350558 GAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCT 350617 |||| | | || || || || || ||||||||||| |||||| ||||| | Sbjct 218316 AAATTCCATTTGACTGGCATACCTCCTGCTCCAAGAGGAGTTCCCCAGATTAAAGTCACC 218257 Query 350618 TTCGATATTGATTCAAATGGTATTTT 350643 || || || ||| | |||||||| || Sbjct 218256 TTTGACATCGATGCCAATGGTATATT 218231 Score = 246 bits (272), Expect = 9e-60 Identities = 586/875 (67%), Gaps = 13/875 (1%) Strand=Plus/Plus Query 182925 AAAATACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACACCTCGTGGCATT 182984 || |||||||| | || | ||||| | |||| |||||| ||||| |||| ||| Sbjct 218231 AATATACCATTGGCATCGATGTCAAAGGTGACTTTAATCTGGGGAACTCCTCTTGGAGCA 218290 Query 182985 GGTGGAATTCCAGTTAAAGTAAATTCACCTAATTTATTATTATCTTTAGTTCTTGCTCTC 183044 || || || ||||| ||| |||| |||| | ||| || || || | | | Sbjct 218291 GGAGGTATGCCAGTCAAATGGAATTTGCCTAGTAAATTGTTGTCACATGTCATAGAACGT 218350 Query 183045 TCGCCTTCATATACTTGAATAGTAACTGCTGGCTGATTATCACTATAAGTAGAAAAAACT 183104 || ||||| | || || || |||| | | || |||| || || | ||| || Sbjct 218351 TCTCCTTCGAAGACCTGGATCATAACCCCCGTTTGGTTATTTTCATTGGTTGTAAATTCT 218410 Query 183105 TGCTTTTTATTAATAGGAATAGTTGAATTTCGCGGAACAATTACAGTCATTACTTCTCTG 183164 || | || || || ||||| | ||||| || | | || ||||| || | | | Sbjct 218411 TGTTCCTTCTTGGCGGGGATAGTAGTATTTCTGGGTATCAGCACGGTCATAACACCGCCG 218470 Query 183165 GCAGTTTCTAATCCTAATGATAATGGTGCTACATCTAGTAATAATAAATCT--GATGTTT 183222 || || || | ||||| ||| | ||| | ||||||||||| | ||||||| || || Sbjct 218471 GCGGTCTCAAGTCCTAGTGACAGTGGAGTGACATCTAGTAACAGTAAATCTTGGACCTTG 218530 Query 183223 TATCT-GATTTAATATCACTTAAAATTGCAGCTTGAACAGCTGCACCATATGCAACAGCT 183281 || |||| || ||||||||||||| |||||||| || ||||| || || ||| Sbjct 218531 ---CTAGATTGTTCGCCAGTTAAAATTGCAGCCTGAACAGCCGCGCCATAGGCTACTGCT 218587 Query 183282 TCATCTGGGTTAATTGAACGAGATAATTCTTTGCCATTAAAAAATTCTGAAAGCATTTGT 183341 || |||||||||||||| | |||||||||||| ||||| || || || ||| Sbjct 218588 TCGTCTGGGTTAATTGATTTGCAGGGTTCTTTGCCATTGAAAAAGTCCTTAATCAATTGC 218647 Query 183342 TGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACTACTTCATCGATATTACTTTTA 183401 || || || || || | || ||||| || || | ||| ||||||| ||| | | ||| Sbjct 218648 TGTATCTTAGGGATACGGGTCGAACCTCCTACAAGTACCACTTCATGGATCTGCTTCTTA 218707 Query 183402 CTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTCCATAGTTTTTCTAAATAAATCT 183461 || | || ||| ||| ||||||| || ||| | ||| ||| | || | || Sbjct 218708 TCCATATCTGCATCAGCTAAGGCTTTTTCGACTGGGATTAAAGTGTTTTTGAACATTTCG 218767 Query 183462 ATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATG-aaaaaaaGTCAATACCATTATA 183520 ||| | ||| || ||||| || |||| | | | || || |||| || |||| | | Sbjct 218768 GCACAGAGCTCCTCGAATCTGGCCCTAG-TGATGTTGCAACTGTAGTCGATGCCATCAAA 218826 Query 183521 TAAGGAATCAATTTCAATCGATGTTTGTGTAGATGATGATAATGTTCTTTTAGCTCGTTC 183580 || | || | |||||| | ||||| || ||||| || | |||||| ||||| Sbjct 218827 TATAGCTTCTACAACAATCGTGGCCTGTGTTGAGTGGGATAAGGTGCGTTTAGCACGTTC 218886 Query 183581 ACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTATCTGTAATA-TCTT--GTTTATG 183637 |||| |||||| |||| |||||||| | | ||| || |||| |||| || Sbjct 218887 ACATTGTGTTCTAAGTCTACGTAATGCACGTCTATTGGTTGAAATATTCTTCCCGCCATT 218946 Query 183638 TTTTCTTTTAAATTCA-GTAATAAAATGTTGAAGTAATCTTGTATCAAAATCTTCACCAC 183696 |||| ||||| ||| || ||| |||| | ||||| | ||||| || ||||| | Sbjct 218947 CTTTCGCTTAAAGTCATCTACGCAAAAGTTG-ACCAATCTGTTGTCAAAGTCCTCACCGC 219005 Query 183697 CTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATATTTAAAA 183756 | || || ||||| || || || || || ||||| || || ||||| ||| |||||| Sbjct 219006 CCAAGTGGGTATCACCTTGTGTGGCCTTTACCTCAAAAATGCCATCTTCGATAGTTAAAA 219065 Query 183757 TTGATACATCAAATGTACCACCACCCAAATCAAAA 183791 |||||||||| || || ||||| |||||||| ||| Sbjct 219066 TTGATACATCGAAAGTGCCACCGCCCAAATCGAAA 219100 Score = 87.8 bits (96), Expect = 5e-12 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAGCC-TC 423822 |||| ||||| ||||| |||| |||| | |||||| ||| |||| ||| ||| |||| || Sbjct 534791 AGCACGGATGGCCGAGCGGTCCAAGGCGCCAGACTCAAGTTCTGGTGGGCGAGAGCCCTC 534850 Query 423823 GTGGGTTCAAACCCCACTCCGTGCATT 423849 ||||||||||| |||||| |||||||| Sbjct 534851 GTGGGTTCAAATCCCACTTCGTGCATT 534877 >seq83 Length=15640 Score = 192 bits (212), Expect = 2e-43 Identities = 239/327 (73%), Gaps = 3/327 (1%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 ||||||||| || || ||| | | | ||| | ||||| | |||| ||| | || Sbjct 10499 AAAATGAAGAGCATGGCCGAAAACTTTCTCGGTCAGACAGTTAAAAATGCCGTTGTGACA 10558 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || || |||||||||||||||||||| || || |||||||| || ||||| Sbjct 10559 GTTCCTGCATATTTTAATGATGCCCAGCGCCAAGCTACCAAAGATGCAGGTCAAATTGCT 10618 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || || ||||| || | || | ||||||||||| || || || ||||| ||||| ||| Sbjct 10619 GGTTTGAATGTATTACGTATACTCAATGAACCCACAGCCGCTGCTATTGCTTATGGTCTT 10678 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 || || | | ||| ||||||||||||| | | | |||| | ||||||||||||||| Sbjct 10679 GACAATAAGGATGA---AGAAAAAAATATTTTGGTCTATGATCTCGGTGGTGGTACTTTT 10735 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 ||||| || ||||| ||| |||| | || | |||||||| | ||| || | || ||| Sbjct 10736 GATGTTTCCCTACTTACAATTGACAACGGTGTATTTGAAGTCATAGCGACATCAGGAGAT 10795 Query 349862 ACACATCTTGGTGGAGAAGATTTTGAT 349888 || || || || || |||||||||||| Sbjct 10796 ACTCACCTCGGCGGTGAAGATTTTGAT 10822 >seq87 Length=54381 Score = 179 bits (198), Expect = 1e-39 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 ||||| |||||||| | || | ||| | ||||||||||||||||||||| || || || Sbjct 38364 CCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGAC 38305 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || || ||||| ||||| || |||||||| || || ||||| |||||||| ||| Sbjct 38304 AGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGGA 38245 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 ||||| || ||||||||||| ||||| || ||||| || || | |||| || || ||| Sbjct 38244 ATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTACT 38185 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || | ||| | || || || || |||||||| ||||| || ||||| Sbjct 38184 TCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCAT 38138 >seq131 Length=192580 Score = 170 bits (188), Expect = 6e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 140535 TGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGT 140594 ||||| || || || ||||| || |||||||| || | ||| || || || || | |||| Sbjct 118664 TGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTGT 118605 Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 ||||||||||| ||||| ||||| ||||| || |||||||| || || || ||||| ||| Sbjct 118604 TTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGAATCTTA 118545 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || |||||||| ||||| | |||| ||||| || ||||| || | || || || || Sbjct 118544 GCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGTA 118485 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 |||||||||||||| || |||||| Sbjct 118484 AGTGTTTTTACAAATATTTGCATT 118461 >seq171 Length=72428 Score = 96.9 bits (106), Expect = 1e-14 Identities = 76/87 (87%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CCTC 423822 |||| ||||||||||||||| |||||||| ||||||||||| |||| |||| | || | Sbjct 39731 AGCACGGATGCCCGAGTGGT-TAAGGGGGTGGACTTAAGATCCTCTGGTCGAAGGACCGC 39789 Query 423823 GTGGGTTCAAACCCCACTCCGTGCATT 423849 |||||||| |||||||||||||||||| Sbjct 39790 GTGGGTTCGAACCCCACTCCGTGCATT 39816 >seq231 Length=155543 Score = 95.1 bits (104), Expect = 4e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 204910 CATAAATTACTAGACTTAATAGTACCAAGGTTTTGTTGATTTGTTTTATAATTAACAGCA 204969 ||||| || ||||||||||||||||| | ||| | ||||||| || |||||| ||| Sbjct 72449 CATAAGTTGCTAGACTTAATAGTACCTATGTTCTTCTGATTTGACTTGTAATTACAAGCG 72390 Query 204970 TCTTTATATAACATATATGGTGTACCTGTTTCCATTTGCGAATCTAAAAT 205019 || || |||||||| || || || |||||||| |||||||| | ||| || Sbjct 72389 TCCTTGTATAACATGTAAGGAGTTCCTGTTTCAATTTGCGATTGTAAGAT 72340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515249857077902