Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650055.1_202016-05-23] 234 sequences; 6,630,005 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq87 120 7e-22 seq131 104 6e-17 seq42 91.5 4e-13 >seq87 Length=54381 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | || | ||| || |||||||| | |||||| || | || ||| | || Sbjct 38353 TCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGACAGAGTGCGGCC 38294 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| ||||| ||||| || || ||||||||||| || || ||||| || ||||| Sbjct 38293 GTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGGAATTCCCTCCTT 38234 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 || || ||||| ||| ||| |||||| || || || || || || || ||||| Sbjct 38233 ATCCTGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTACTTCCAATGTGAT 38174 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| | ||||| | || | |||||| Sbjct 38173 GGTTTTACCCGTGAGTGTTTTCACAAATATTTGCAT 38138 >seq131 Length=192580 Score = 104 bits (114), Expect = 6e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || || ||||| ||||| | || ||||| | | || | || || || | || Sbjct 118665 GTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTG 118606 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || ||||| || || ||||||||||| ||||| ||||| || ||||||||||| ||||| Sbjct 118605 TTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGAATCTT 118546 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| ||| || || || | |||||| || | || || || || ||||| Sbjct 118545 AGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGT 118486 Query 225690 CAAAGTTTTTATGAACACTTGCATTTT 225716 | ||||||| || | ||||||||| Sbjct 118485 AAGTGTTTTTACAAATATTTGCATTTT 118459 >seq42 Length=10368 Score = 91.5 bits (100), Expect = 4e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 ||||| |||||||||||||| || || ||||| ||||| || ||||| || |||||||| Sbjct 660 AATATCTGACCATCAGTAATGGAAATGACATTGGTAGGTATGTAAGCTGAGACATCACCG 719 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCC 4568 || || ||||| | || |||| || ||||||||||| Sbjct 720 GCCTGAGTTTCAATTACGGGTAGAGCAGTTAGTGATCC 757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192527624642396