Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650055.1_202016-05-23] 234 sequences; 6,630,005 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq87 102 8e-17 seq131 87.8 2e-12 >seq87 Length=54381 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||||| | ||||||| ||||| || ||| || ||||| || ||||| || Sbjct 38364 CCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGAC 38305 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || || ||||| || || || ||||| || ||||| || | ||| Sbjct 38304 AGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGGA 38245 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || || | ||| | | ||| || || | ||| || Sbjct 38244 ATTCCCTCCTTATCC-TGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTAC 38186 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || ||||||||||| || || || || || || ||||| Sbjct 38185 TTCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCAT 38138 >seq131 Length=192580 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41650 TAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTC 41709 |||||| | || ||||| ||||| || |||||||| || || || || || |||| Sbjct 118674 TAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTC 118615 Query 41710 GTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 || | || || || || || || || || ||||| || | ||||| | ||||||||| Sbjct 118614 CTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTC 118555 Query 41770 CATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCG 41828 ||| | || || | || || ||| || || | |||||||| | ||||| | Sbjct 118554 T-TGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGG 118496 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||||| || || ||||| || || ||||| || Sbjct 118495 TTTTACCCGTAAGTGTTTTTACAAATATTTGCATTTT 118459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302647760800