Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650065.1_202016-05-23] 82 sequences; 6,346,114 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq45 100 2e-16 >seq45 Length=276350 Score = 100 bits (110), Expect = 2e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 28949 TAATAGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGA 29008 |||| |||| | ||||||||||| | |||||| | ||||| |||||||| || || Sbjct 46020 TAATTGTGTCACTATGCAAATATTTGTGAAAACACTCACGGGTAAAACCATCACATTGGA 45961 Query 29009 AACGGAACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGT 29068 | || ||| || || | | || ||||| || ||| ||||| || || | Sbjct 45960 AGTAGAGCCCAGTGATACTATCGAAAATGTTAAGGCTAAGATTCAGGATAAGGAGGGAAT 45901 Query 29069 GCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTAT 29128 || ||||||||| |||| || ||||| || || ||||| ||||| | ||| | Sbjct 45900 TCCACCTGATCAACAACGACTGATTTTTGCTGGTAAGCAACTAGAAGACGGCCGCACTCT 45841 Query 29129 GGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | | || ||||||||||| || || |||||| | || ||||||| ||||||| || || Sbjct 45840 GTCAGACTACAATATTCAAAAAGAGTCTACTTTGCATTTGGTGTTGAGATTACGCGGTGG 45781 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 28956 GTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAA 29015 ||||||||||||||||| | |||||| | ||||| |||||||| ||| || |||| Sbjct 157900 GTAAAAATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAA 157841 Query 29016 CCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTA 29075 || || || | | || | ||| || ||| || || || || | ||| Sbjct 157840 CCTAGTGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCC 157781 Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGA--TTCCAAAACTATGGCCG 29133 ||||||||| |||| || ||||| || |||||| |||| || || | ||| | | | Sbjct 157780 GATCAACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAG 157723 Query 29134 ATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 |||| || || || |||||||| || |||||| | |||||| Sbjct 157722 ATTATAACATACAAAAGGAATCGACGCTTCACTTAGTGTTA 157682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428335571931710