Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650065.1_202016-05-23] 82 sequences; 6,346,114 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq39 132 5e-26 seq45 111 2e-19 >seq39 Length=443216 Score = 132 bits (146), Expect = 5e-26 Identities = 121/153 (79%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 117039 GCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATAT 117098 ||| |||||||| | |||| || || || | || |||||||| || ||| |||||||| Sbjct 41638 GCCAGGTGGCCTACACGGCAGTGGAAGGAATTTTATTTTCGGGTAGCTTCTGCGCCATAT 41579 Query 117099 TTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCA 117158 ||||||| || |||||||| ||||||||||| || || || |||||| || ||||||| Sbjct 41578 TTTGGCTGAAAAAACGCGGGCTCATGCCCGGGCTAACCTTTTCCAACGAACTAATCTCCA 41519 Query 117159 GGGACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191 ||||||||||||| || ||| |||| |||| Sbjct 41518 GGGACGAGGGTCTACACGCCGAGTTTGGATGTT 41486 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 116648 TACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACG 116707 ||||||||||| |||| || || ||||| || || ||||| ||| || || ||| | Sbjct 42086 TACAAAAAGGCTCAGGCTTCATTTTGGACAGTTGAAGAGGTTGACTTGGGCACCGACTCT 42027 Query 116708 AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 |||||||| | | |||| ||| |||||| || || || ||||| ||| ||||||| Sbjct 42026 CGCGACTGGTTGGGTTTGACTGACGGCGAGCGGCACTTTATAAAGCATGTGTTGGCCTTC 41967 Query 116768 TTCGCCGCCAG 116778 || || ||||| Sbjct 41966 TTTGCGGCCAG 41956 >seq45 Length=276350 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||||||||||| |||||||| || ||||| |||||||| ||| | || || ||| | Sbjct 157898 AAAAATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACC 157839 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | | ||| | |||| || |||| ||||| ||||| || ||| | || Sbjct 157838 TAGTGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGA 157779 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || |||||||| || | || || ||||| |||| |||| || || || || || Sbjct 157778 TCAACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGATTA 157719 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 ||||| || ||||| | ||||| || ||||||| Sbjct 157718 TAACATACAAAAGGAATCGACGCTTCACTTAGTGTT 157683 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||| || ||||| |||||||| ||||||||||| | || || || ||| Sbjct 46007 ATGCAAATATTTGTGAAAACACTCACGGGTAAAACCATCACATTGGAAGTAGAGCCCAGT 45948 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | |||| || |||| || || ||||| || || | || || Sbjct 45947 GATACTATCGAAAATGTTAAGGCTAAGATTCAGGATAAGGAGGGAATTCCACCTGATCAA 45888 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||||| || | || || || || || || |||| ||||| || |||||||| Sbjct 45887 CAACGACTGATTTTTGCTGGTAAGCAACTAGAAGACGGCCGCACTCTGTCAGACTACAAT 45828 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || || || ||| | || ||||| | |||||| Sbjct 45827 ATTCAAAAAGAGTCTACTTTGCATTTGGTGTTG 45795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218671900320