Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650065.1_202016-05-23] 82 sequences; 6,346,114 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq73 134 1e-26 seq45 122 8e-23 >seq73 Length=143992 Score = 134 bits (148), Expect = 1e-26 Identities = 188/262 (72%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 132879 TCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGTT 132938 || || |||||||| |||| | || ||||||| |||||||||||||| | || ||| Sbjct 52131 TCTACTGTAAACTTGATGGCATCGGCAGCGGGTTGGGTGCGCAAATAATATACTCCAGTT 52072 Query 132939 TTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCACCGAGTAAGTGGGTTCG 132998 || ||| ||||| ||| | |||||||| || || |||| | | || || || | Sbjct 52071 TTTAGTCCTTTCTTCCAGCCATAAAAGTGCATACTAGACAACTTGGCATATGTAGGCTGT 52012 Query 132999 GCGACAAATAAAT--TCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCCA 133056 | || ||||| ||||||||||| ||| || ||||| | | || ||||| |||| Sbjct 52011 TC--CATGTAAATGTTCAGCGATTGAGACTGGTCAATGAAGGCGCCGCGATCGGCTGCCA 51954 Query 133057 TGTTTATTATACACTTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCT 133116 ||| ||||| ||| ||||||||||||| | || ||| | |||||||| | | | Sbjct 51953 TGTCAATTATCGCCTTCTGTTTGATCTCCCATACGGTTTTGTACAGATTCTTTAGCTCTT 51894 Query 133117 GTGGTATTTCGTCAATGTTCTG 133138 |||||||||| || ||||| || Sbjct 51893 GTGGTATTTCATCGATGTTTTG 51872 >seq45 Length=276350 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || |||||||||||||||||||| || | ||||||||||||||||| ||||| || | Sbjct 45781 CCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGAC 45840 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| || || || || || ||||| | || || || || ||||| || || Sbjct 45841 AGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGGA 45900 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || |||||||| || ||| || ||||| | ||||| || || || ||| || Sbjct 45901 ATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTACT 45960 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | ||||| || || || ||||| ||||| || ||||| Sbjct 45961 TCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCAT 46007 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 || ||||| ||||| | || || || ||||| ||||| ||||| | | |||| || Sbjct 157680 CTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATC--TGAAAGTGTACGAC 157737 Query 118584 --TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCT 118641 ||||| | ||||||||||| | || || || || |||||||| || || ||||||| Sbjct 157738 CGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCT 157797 Query 118642 TGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCA 118701 ||||| ||| || || || | ||| | || || | || ||||| | ||| | Sbjct 157798 TGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTA 157857 Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || ||||||||||| || ||||| Sbjct 157858 TGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 157894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829966440744