Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650065.1_202016-05-23] 82 sequences; 6,346,114 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq45 122 1e-22 >seq45 Length=276350 Score = 122 bits (134), Expect = 1e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| || | ||| | ||||||||||||||| || ||| |||||||||||||| || | Sbjct 45780 TCCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGA 45839 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 |||||| || |||| ||||| ||||||||||| || || ||||| || || || | || Sbjct 45840 CAGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGG 45899 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | |||||| ||| ||| | || | || | | | | || || || | || | Sbjct 45900 AATTCCCTCCTTATCC-TGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTA 45958 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||||||||| ||||| || || || ||||| |||||||| Sbjct 45959 CTTCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCAT 46007 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || || ||||| | || || || |||| || | || || ||||| || Sbjct 157704 TCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAA 157763 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 43111 || ||||| || || |||| || | | ||||||||| ||| | || | || | | Sbjct 157764 ATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCT-TGAATCTTAGCCTTTACATT 157822 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || || || | |||||| || | || |||||||| ||||| || || ||||| Sbjct 157823 TTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTAC 157882 Query 43172 AAAGATTTGCATTTTTAC 43189 ||| |||||||||||||| Sbjct 157883 AAATATTTGCATTTTTAC 157900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817013886960