Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650065.1_202016-05-23] 82 sequences; 6,346,114 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq73 172 7e-38 seq39 123 3e-23 >seq73 Length=143992 Score = 172 bits (190), Expect = 7e-38 Identities = 645/996 (65%), Gaps = 44/996 (4%) Strand=Plus/Minus Query 65559 TCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCT 65618 || |||||||| ||||| || | ||| || || ||||||||||| ||||| |||||| Sbjct 51307 TCAGCTAATCCCTGAACTCCTACACCTATTGGCCTATGTCTCTTGTTAGAATATTCAGCC 51248 Query 65619 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTG 65678 || |||| ||| |||||||| ||||||||| |||| | ||| || || ||| Sbjct 51247 TCAGGAACAGGGTAATAATTCTCGTCTATAATTCTATTCAAATTGAAAGTAAGTATCTTG 51188 Query 65679 --ACCACATCCT--TCAGTTTGAGAAAATCAAATCGCTCA--TCTA----TTACAAACAT 65728 | || | | | | || ||| |||||| | | || ||||| || | Sbjct 51187 CAAGCAGAATGTAATAACTT----AAAGTCAAATTCGAGAGTTTTAGTGTTTACATACTT 51132 Query 65729 GTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 65788 |||||| | || || || ||||| || || || ||||||| | | |||||| | Sbjct 51131 TGGCAATGCTAGTGAAGCGAGGTTACACACTGCAACTTCATTAGGAGATGTATATTGCAC 51072 Query 65789 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 65848 ||||| ||| | || ||| |||| || || |||| || | ||||| ||| | Sbjct 51071 AATCTCGCAGCATAAGTTGCTAGACTTAATAGTACCTATGTTCTTCTGATTTGACTTGTA 51012 Query 65849 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 65908 ||||| || ||||| || | ||| | ||||| || |||||||| || |||| || || Sbjct 51011 ATTACAAGCGTCCTTGTATAACATGTAAGGAGTTCCTGTTTCAATTTGCGATTGTAAGAT 50952 Query 65909 CGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT---TCGTA 65965 || ||| | | | | || | | | |||| | | | || | || || Sbjct 50951 AGCAAACCAAAGGGTTTGCGCGGGAACTGT---TTTGCGACCCATGCCTTTCGACTCATA 50895 Query 65966 --TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 66023 ||||||||| || ||| || || ||||||||||| | || | ||| ||| ||| Sbjct 50894 ACTAGTGTATA--ATTTTTCAAATTCCTCTCCCCAAACCTGATCTAGTCCTCTACACTCA 50837 Query 66024 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 66083 || || |||||||| | ||| | | | | | | | || | |||||| || || || || Sbjct 50836 TCTGGGCACATCAAAGTCCAGTTTTCATTAGCTTCAACCCTTTTCATGAAAAGGTCTGGG 50777 Query 66084 ATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 66142 ||||| | || ||| || || || || | || ||||| || || ||| Sbjct 50776 ATCCACAATGC-ATAGAACAAGTCCCTAGCCCTTGACTCCTCTGAACCATGGTTTTTTCG 50718 Query 66143 AAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCC 66202 ||||| ||||| | | ||||||| |||||| || || | ||| ||||| || | Sbjct 50717 TAGATCTAGGAATTCAAAAATATCAGCATGCCATGGCTCTAGGTAGATGGC---AAATGA 50661 Query 66203 AGGCCGTTTGTTT-----CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 66257 | || ||| ||| ||||||||||| | || | ||| || | ||| | | ||| Sbjct 50660 A--CCTTTTCTTTTTCCCCCTCCCTGATCAACATAACGAGCAGTATCATTGAATATTCTG 50603 Query 66258 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTG-- 66315 | ||| || ||||| |||||||| ||||| || ||| || || | ||| | Sbjct 50602 AGCATAGGTATAATCCCATTGGAATGCCCATTTGTGCCGCGAATGTA---TGAACTGGAG 50546 Query 66316 -CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 66374 |||| || || |||| || |||||| || ||||| | ||| || | ||| ||| Sbjct 50545 GCACGTATTTTGTGTATTGCTAAACCTATCCCTCCTGCTGTCTTACTAATGAGTGCACAT 50486 Query 66375 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 66434 | | | || ||| | || || ||| ||||||| | || | ||| || || ||| Sbjct 50485 TGGGTAAGGGTGTCAAAAATACCAGAAATAGAATCATCCTTAATATCAAGAAGGAAGCAG 50426 Query 66435 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494 ||||||||||| || ||||||| | || || | || |||| ||||| |||| Sbjct 50425 CTAGACATTTGAGGAAATTTAGTTCCAGAGTTGAAGAGTGTGGGAGTGGCGTGGATAAAT 50366 Query 66495 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGC 66529 |||| | || | ||| |||||| ||||| || || Sbjct 50365 AATTTCTTGGACATGTA-ATTGTAAGTCTCCATGGC 50331 >seq39 Length=443216 Score = 123 bits (136), Expect = 3e-23 Identities = 116/145 (80%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 |||| ||||| | || ||| ||||||||||||||| || |||| ||||||||||| Sbjct 41480 ACATATAACATCCAAACTCGGCGTGTAGACCCTCGTCCCTGGAGATTAGTTCGTTGGAAA 41539 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 36268 | || || |||||||| || || || ||||| ||||||||||||| |||| | | | || Sbjct 41540 AGGTTAGCCCGGGCATGAGCCCGCGTTTTTTCAGCCAAAATATGG-CGCAGAAGCTACCC 41598 Query 36269 GAAAAGAAAATTCCTTCTACTGCCG 36293 ||||| ||||||||||| ||||||| Sbjct 41599 GAAAATAAAATTCCTTCCACTGCCG 41623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172125372880