Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650065.1_202016-05-23] 82 sequences; 6,346,114 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq45 159 3e-34 >seq45 Length=276350 Score = 159 bits (176), Expect = 3e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| ||||| ||||| ||||| || || || ||||||||||| ||||| Sbjct 157668 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAA 157727 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | |||| || |||||||| ||||| | || | |||||||| ||| ||| Sbjct 157728 AGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGA 157787 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| || ||||| ||| || ||||||| |||| || ||||| ||| ||| || Sbjct 157788 ATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACC 157847 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 || | ||| ||||||||||| || || ||||||||||| |||||||| ||| Sbjct 157848 TCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATTTTT 157898 Score = 129 bits (142), Expect = 4e-25 Identities = 169/233 (73%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 15132 GTCTGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAAT 15191 |||| ||||| | ||||| || || ||||| | || || |||||||| || ||||| | Sbjct 45777 GTCT-CCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGT 45835 Query 15192 CGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGT 15251 | ||| | | ||||||||| ||| || ||||| | |||| |||||||| || Sbjct 45836 CTGACAGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAG 45895 Query 15252 TTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTT 15311 ||||||||| || || || ||| || ||| ||| |||| || ||||| || | Sbjct 45896 GTGGAATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCT 45955 Query 15312 CTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || || || ||||||||||| || || ||||| ||||| ||||||||| Sbjct 45956 CTACTTCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCATA 46008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178838047162